Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1080 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACGCCGCTCCAGCCGCCACCATCGCCACCGCCGCTGCACCCTCCGCCGGACCCCTCGCCCACACCAACCAAGATTCCTCTGCGGCCGCCTCCGCCGTCCCCAACGGCATCTCCGCCGGTGCCACTGCCCCCTCCGCCGCTGATCCCGCGGCTTCCGGGAACGTTCCCGGGAGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTGCGGAGCCTGTGCATGAAGGGGGACGCGTGCGGGTTCCTGCACCAGTACGACAAGGCGAGGATGCCGGTGTGCCGGTTTTTCCGGCTGTTTGGTGAGTGCCGCGAGCAGGACTGCGTTTACAAGCACACCAACGAAGATATCAAGGAGTGTAACATGTATAAGTTAGGATTTTGTCCCAACGGTCCTGATTGCCGATATAGGCATGCAAAATCTCCTGGACCTCCACCTCCAGTTGAAGAGGTCCTTGCAAAGATCCAGCATTTATATTCTTACAACTTCAATGCCTCTAACAAGTTTTTCCAACAAAGGGGTGCTAGCTATAACCAACAAGTTGAAAAATCTCAATTTCCTCAAGGAAATAATTCCACAAACCAAGGTGTTGCTGGAAAACAATTACCAGCAGAGTCAGGTAATGTCCAGCAGCAGCAGCAGCAAGTACAACAGTCACAGCAGCAGGTCAGCCAGAGCCAAATGCAAAATGTTGCTAATGGCCAGCCCAATCAAGCGAATAGAACTGCAACTCCTTTACCGCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCAGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCCAAACTAAATGAAGCATTTGACTCTGTGGAAAATGTGATACTGATTTTCTCAGTCAACCGAACTCGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGAGGGAACTGGAAGTATGCTCACGGAACTGCACATTATGGGCGGAATTTTTCTGTTAAATGGTTGAAGTTATGTGAACTGTCATTCCACAAAACCCGCCATTTAAGGAATCCGTACAATGAAAATTTACCCGTGAAGATAAGTAGAGATTGTCAGGAGCTAGAGCCTTCTATTGGTGAGCAGCTGGCATCCTTGCTTTATCTTGAGCCAGATAGTGAACTTATGGCTATCTCAGTTGCAGCAGAGTCTAAACGAGAAGAAGAGAAAGCAAAGGGAGTGAATCCAGATAATGGAGGAGACAATCCAGATATTGTCCCATTCGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGACGAGAGCTTTAGTCATGGTGTTGGGCCTGTTGGTCAAGGCAGAGGTAGGGGTAGAGGCATGATGTGGCCGCCTCACATGCCTCTTGCACGTGGTGCCAGACCTATGCCTGGTATGCAAGGTTTTAACCCAGTAATGATGGGTGATGGATTGTCTTACGGGCCTGCTGGGCCTGATGGATTTGGTATGCCAGATCTTTTTGGTGTGGGCCCCCGTGCTTTTGCTCCATATGGTCCTAGGTTCTCTGGGGATTTTGCAGGCCCCCCAGCAGCCATGATGTTTCGTGGGCGACCCTCACAACCTGGGATGTTTCCTGGTGGTGGATTTGGGATGATGATGAATCCTGCACGTGCTCACTTTATGGGTGGGATGGGAGTCGCAGGTGCAAATCCACCAAGAGGTGGTAGGCCAGTTACCGTGCCTCCGATGTTTCCACCACCTCCGCCTCCACTTCAGAATAACAACCGTCCTGCCAAGAGAGATCAAAAAACTAATGATCGGATTGATAAGTTTGGTTCAGGATTAGAGCAGGGCAAGAGTCAAGATATGCAAAGTGGTGGACCTGATGATGACATGCAATATCAACAAGGATACAAGGCAACTCAGGATGATCATTATCCTGGCAATAACAACTTCCGGAATGATGACAGTGAAAGTGAGGATGAGGCACCTCGCCGGTCAAGACATGGAGAGGGGAAGAAGAGAAGGAGAAGCTCAGAAGATGCCAATGCAAGCTCTAATCACTAG 2118 0.5 MEDSEGVLSFDFEGGLDAAPAATIATAAAPSAGPLAHTNQDSSAAASAVPNGISAGATAPSAADPAASGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLFGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLAKIQHLYSYNFNASNKFFQQRGASYNQQVEKSQFPQGNNSTNQGVAGKQLPAESGNVQQQQQQVQQSQQQVSQSQMQNVANGQPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAKGVNPDNGGDNPDIVPFEDNEEEEEEESDEEDESFSHGVGPVGQGRGRGRGMMWPPHMPLARGARPMPGMQGFNPVMMGDGLSYGPAGPDGFGMPDLFGVGPRAFAPYGPRFSGDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPARAHFMGGMGVAGANPPRGGRPVTVPPMFPPPPPPLQNNNRPAKRDQKTNDRIDKFGSGLEQGKSQDMQSGGPDDDMQYQQGYKATQDDHYPGNNNFRNDDSESEDEAPRRSRHGEGKKRRRSSEDANASSNH* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1080 705 MobiDBLite consensus disorder prediction 441 459 - -
Dod03g1080 705 MobiDBLite consensus disorder prediction 592 611 - -
Dod03g1080 705 MobiDBLite consensus disorder prediction 616 630 - -
Dod03g1080 705 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 697 - -
Dod03g1080 705 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Dod03g1080 705 Pfam YT521-B-like domain 267 329 IPR007275 GO:0003723
Dod03g1080 705 Pfam YT521-B-like domain 346 401 IPR007275 GO:0003723
Dod03g1080 705 ProSiteProfiles Zinc finger C3H1-type profile. 76 103 IPR000571 GO:0046872
Dod03g1080 705 SMART c3hfinal6 76 102 IPR000571 GO:0046872
Dod03g1080 705 SMART c3hfinal6 104 130 IPR000571 GO:0046872
Dod03g1080 705 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Dod03g1080 705 MobiDBLite consensus disorder prediction 417 478 - -
Dod03g1080 705 SUPERFAMILY CCCH zinc finger 76 107 IPR036855 GO:0046872
Dod03g1080 705 Gene3D ph1033 like domains 244 405 - -
Dod03g1080 705 MobiDBLite consensus disorder prediction 581 705 - -
Dod03g1080 705 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 697 IPR045168 -
Dod03g1080 705 Coils Coil 225 245 - -
Dod03g1080 705 MobiDBLite consensus disorder prediction 634 665 - -
Dod03g1080 705 MobiDBLite consensus disorder prediction 666 699 - -
Dod03g1080 705 Gene3D - 71 133 - -
Dod03g1080 705 ProSiteProfiles YTH domain profile. 267 402 IPR007275 GO:0003723
Dod03g1080 705 MobiDBLite consensus disorder prediction 196 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1080 Dod-Chr3 13315904 13324721 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod03g1080 YTH 3.8e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1080 K14404 - gmx:100802826 1135.94