Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1078 ATGGAGGATTCCGAGGGAGTCCTCAGCTTGGATTTCGAGGGCGGCCTCGACGCGGCTCCAGCCGCCACCATCGCCACAGCCGCTGCACCCTCCACCGGACCCCTCGCCCACACCAACCACGATTCCTCCTCCGCCGCGTCCGCCGTCCCCAATGGCATCTCCGCCGGTGCCGCTGCCCCTTCCCCCGCCGACCCCTCGGCTTCCGGGAACGTGCCCGGGCGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGTTGCGGAGCCCGTGCATGAAGGGGGACGCGTGCGGGTTCCTGCACCAGTACGACAAGGCGAGGATGCCGGTGTGCCGGTTTTTTCGGCTGTTTGGTGAGTGCCGCGAGCTGGACTGCGTTTACAAGCACACCAACGAAGATATCAAGGAGTGTAACATGTATAAGTTAGGATTTTGCCCCAACGGGCCTGATTGCCGATATAGGCATGCAAAATGTCCTGGACCTCCACCTCCGGTTGAAGAGGTCCTTGCTAAGATCCAGCATTTATATTCTTACAACTTCAATGCCTCTAACAAGTTTTTCCAACAAAGGGGTGCTATCTATAACCAACAAGTTGGAAAATCTCAATTTCCTCAAGGACATAATTCCACAAACCAAGGTGTTGCTGGAAAACCATTACCAGCAGAGTCAGGTAATGTCCAGCAGCAGCAGCAAGTACAACAGTCACAGCAGCAGGTCAGCCAGAGCCAAATGCAAAATGTTGCTAATGGCCAGCCCAATCAAGCAAATAGAACTGCAACTCCTTTGCCGCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCAGTACAGCAAGGAGGATGGGCAACTCAAAGGAGCAATGAATCCAAACTAAATGATGCTTTTGACTCTGTGGAAAATGTGATACTGATTTTCTCAGTCAACCGAACTCTGACATTTCCAGGGTTGTGCAAAGATGACGTCCAGAATTGGTGGTTCTGTTGCTGGAGGGAACTGGAAGTATTGTCATGGAACTGCACATTACGGGCGGAATTTTTCTGCTAA 1065 0.5221 MEDSEGVLSLDFEGGLDAAPAATIATAAAPSTGPLAHTNHDSSSAASAVPNGISAGAAAPSPADPSASGNVPGRRSFRQTVCRHWLRSPCMKGDACGFLHQYDKARMPVCRFFRLFGECRELDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKCPGPPPPVEEVLAKIQHLYSYNFNASNKFFQQRGAIYNQQVGKSQFPQGHNSTNQGVAGKPLPAESGNVQQQQQVQQSQQQVSQSQMQNVANGQPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGGWATQRSNESKLNDAFDSVENVILIFSVNRTLTFPGLCKDDVQNWWFCCWRELEVLSWNCTLRAEFFC* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1078 354 Gene3D ph1033 like domains 222 326 - -
Dod03g1078 354 Gene3D - 71 132 - -
Dod03g1078 354 MobiDBLite consensus disorder prediction 30 74 - -
Dod03g1078 354 ProSiteProfiles YTH domain profile. 266 354 IPR007275 GO:0003723
Dod03g1078 354 Pfam YT521-B-like domain 266 323 IPR007275 GO:0003723
Dod03g1078 354 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 325 IPR045168 -
Dod03g1078 354 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Dod03g1078 354 Coils Coil 224 244 - -
Dod03g1078 354 MobiDBLite consensus disorder prediction 199 259 - -
Dod03g1078 354 MobiDBLite consensus disorder prediction 32 50 - -
Dod03g1078 354 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 325 - -
Dod03g1078 354 SMART c3hfinal6 104 130 IPR000571 GO:0046872
Dod03g1078 354 SMART c3hfinal6 76 102 IPR000571 GO:0046872
Dod03g1078 354 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Dod03g1078 354 SUPERFAMILY CCCH zinc finger 76 106 IPR036855 GO:0046872
Dod03g1078 354 ProSiteProfiles Zinc finger C3H1-type profile. 76 103 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1078 Dod-Chr3 13267310 13271267 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod03g1078 YTH 1.3e-19 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1078 K14404 - gmx:100802826 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1078 03 13267310 13271267 Dod03g1078 03 13267310 13271267 ECH