Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1077 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACGCCGCTCCAGCCGCCACCATCGCCACCGCCGCTGCACCCTCCGCCGGACCCCTCGCCCACACCAACCAAGATTCCTCTGCGGCCGCCTCCGCCGTCCCCAACGGCATCTCCGCCGGTGCCACTGCCCCCTCCGCCGCTGATCCCGCGGCTTCCGGGAACGTTCCCGGGAGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTGCGGAGCCTGTGCATGAAGGGGGACGCGTGCGGGTTCCTGCACCAGTACGACAAGGCGAGGATGCCGGTGTGCCGGTTTTTCCGGCTGTTTGGTGAGTGCCGCGAGCAGGACTGCGTTTACAAGCACACCAACGAAGATATCAAGGAGTGTAACATGTATAAGTTAGGATTTTGTCCCAACGGTCCTGATTGCCGATATAGGCATGCAAAATCTCCTGGACCTCCACCTCCAGTTGAAGAGGTCCTTGCAAAGATCCAGCATTTATATTCTTACAACTTCAATGCCTCTAACAAGTTTTTCCAACAAAGGGGTGCTAGCTATAACCAACAAGTTGAAAAATCTCAATTTCCTCAAGGAAATAATTCCACAAACCAAGGTGTTGCTGGAAAACAATTACCAGCAGAGTCAGGTAATGTCCAGCAGCAGCAGCAGCAAGTACAACAGTCACAGCAGCAGGTCAGCCAGAGCCAAATGCAAAATGTTGCTAATGGCCAGCCCAATCAAGCGAATAGAACTGCAACTCCTTTACCGCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCAGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCCAAACTAAATGAAGCTTTTGACTCTGTGGAAAATGTGATACTGATTTTCTCAGTCAACCGAACTCGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGAGGGAACTGGAAGTATGCTCACGGAACTGCACATTATGGGCGGAATTTTTCTGTTAAATGGTTGAAGTTATGTGAACTGTCATTCCACAAAACCCGCCATTTAAGGAATCCGTACAATGAAAATTTACCCGTGAAGATAAGTAGAGATTGTCAGGAGCTAGAGCCTTCTATTGGTGAGCAGCTGGCATCCTTGCTTTATCTTGAGCCAGATAGTGAACTTATGGCTATCTCAGTTGCAGCAGAGTCTAAACGAGAAGAAGAGAAAGCAAAGGGAGTGAATCCAGATAATGGAGGAGACAATCCAGATATTGTCCCATTCGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGACGAGAGCTTTAGTCATGGTGTTGGGCCTGTTGGTCAAGGCAGAGGTAGGGGTAGAGGCATGATGTGGCCGCCTCACATGCCTCTTGCACGTGGTGCCAGACCTATGCCTGGTATGCAAGGTTTTAACCCAGTAATGATGGGTGATGGATTGTCTTACGGGCCTGCTGGGCCTGATGGATTTGGTATGCCAGATCTTTTTGGTGTGGGCCCCCGTGCTTTTGCTCCATATGGTCCTAGGTTCTCTGGGGATTTTGCAGGCCCCCCAGCAGCCATGATGTTTCGTGGGCGACCCTCACAACCTGGGATGTTTCCTGGTGGTGGATTTGGGATGATGATGAATCCTGCACGTGCTCACTTTATGGGTGGGATGGGAGTCGCAGGTGCAAATCATAGGCCAGTTACCGTGCCTCCGATGTTTCCACCACCTCCGCCTCCACTTCAGAATAACAACCGTCCTGCCAAGAGAGATCAAAAAACTAATGATCGGATTGATAAGTTTGGTTCAGGATTAGAGCAGGGCAAGAGTCAAGATATGCAAAGTGGTGGACCTGATGATGACATGCAATATCAACAAGGATACAAGGCAACTCAGGATGATCATCATCCTGGCAATAACAACTTCCGGAATGATGACAGTGAAAGTGAGGATGAGGCACCTCGGCGGTCAAGACATGGAGAGGGGAAGAAGAGAAGGAGAAGCTCAGAAGATGCCAATGCAAGCTCTAATCACTAG 2106 0.4995 MEDSEGVLSFDFEGGLDAAPAATIATAAAPSAGPLAHTNQDSSAAASAVPNGISAGATAPSAADPAASGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLFGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLAKIQHLYSYNFNASNKFFQQRGASYNQQVEKSQFPQGNNSTNQGVAGKQLPAESGNVQQQQQQVQQSQQQVSQSQMQNVANGQPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAKGVNPDNGGDNPDIVPFEDNEEEEEEESDEEDESFSHGVGPVGQGRGRGRGMMWPPHMPLARGARPMPGMQGFNPVMMGDGLSYGPAGPDGFGMPDLFGVGPRAFAPYGPRFSGDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPARAHFMGGMGVAGANHRPVTVPPMFPPPPPPLQNNNRPAKRDQKTNDRIDKFGSGLEQGKSQDMQSGGPDDDMQYQQGYKATQDDHHPGNNNFRNDDSESEDEAPRRSRHGEGKKRRRSSEDANASSNH* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1077 701 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 693 IPR045168 -
Dod03g1077 701 MobiDBLite consensus disorder prediction 441 459 - -
Dod03g1077 701 Gene3D - 71 134 - -
Dod03g1077 701 MobiDBLite consensus disorder prediction 612 626 - -
Dod03g1077 701 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Dod03g1077 701 ProSiteProfiles Zinc finger C3H1-type profile. 76 103 IPR000571 GO:0046872
Dod03g1077 701 Gene3D ph1033 like domains 244 405 - -
Dod03g1077 701 SMART c3hfinal6 76 102 IPR000571 GO:0046872
Dod03g1077 701 SMART c3hfinal6 104 130 IPR000571 GO:0046872
Dod03g1077 701 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Dod03g1077 701 MobiDBLite consensus disorder prediction 417 478 - -
Dod03g1077 701 MobiDBLite consensus disorder prediction 589 701 - -
Dod03g1077 701 SUPERFAMILY CCCH zinc finger 76 107 IPR036855 GO:0046872
Dod03g1077 701 MobiDBLite consensus disorder prediction 592 607 - -
Dod03g1077 701 Pfam YT521-B-like domain 267 329 IPR007275 GO:0003723
Dod03g1077 701 Pfam YT521-B-like domain 346 401 IPR007275 GO:0003723
Dod03g1077 701 Coils Coil 225 245 - -
Dod03g1077 701 MobiDBLite consensus disorder prediction 659 695 - -
Dod03g1077 701 MobiDBLite consensus disorder prediction 630 658 - -
Dod03g1077 701 ProSiteProfiles YTH domain profile. 267 402 IPR007275 GO:0003723
Dod03g1077 701 MobiDBLite consensus disorder prediction 196 261 - -
Dod03g1077 701 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1077 Dod-Chr3 13175418 13184217 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod03g1077 YTH 3.8e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1077 K14404 - gmx:100802826 1125.15