Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1073 ATGGAGAAAGCTTCTTGCTTATTCTTCTTCACTTTTGTCTTGTCATTCCACCATTTCATGGCCTCCTCAGAAATAAGCAAATCCAACTTCGGTGTGGACCAATCTGCCCTTCTGGCCTTAAAATCTTATCTCACTTTGGATCCTCAACACATATTGTCCAATAATTGGTCTACCTCCGTTTCTGTGTGCAAATGGTTTGGGGTCACTTGTGATGCCAATGGAAGGGTCATGGCCTTAACTCTACCAAACATGAGTTTAAATGGTACCCTTCCCCCTAACTTAGGAAACTTATCTTTTCTTGTAAACCTTGATCTTCACAACAATAGCTTTCACGGAACTGTGCCAAAAGAATTGACCGTGTTACCTAGATTGAAGGTGGTCAACTTGTGCACCAATAAACTTGGTGGAAATTTTCCAACATGGATTGGGGAGTTATCTAAACTCCAAAATTTGAGTCTTTGCAACAATAGTTTTTTAGGTTCAATTCCTGCATCTTTATCCAACTTGTCGGAGTTGGAGAGTTTGGATTTGAGCTTTAATTTGATAGGTGGGAGCATTCCACCTGCGCTTGGGAGGCTTCATAACTTGAAGGTTTTGGAGTTGGAACACAATAAACTATCCAGTGACATTCCTTCTTCAATCTTTAATATCTCCACGCTGCAAGAGATTGATTTCGCCTATAATTCTTTATCAGGAAGCATCCCTGAGAAAGTTGGAGATGCATCACAACTGAGAAGTATAAATTTGAGCAAAAATAACCTCTCGGGCTCCATACCATCGTCCTTGTTCAACATCTCAACGCTTGAAGAGATTCAATTCATTTACAATAACCTATCTGGCCCTCTGCCATATGATATGTGCCATGGGTTTCCGATGCTCCAAAAGCTTGACCTGTCAGGGAATGCATTTTATGGTCAAATTCCACAAAGTCTGCTTCAATGTAAGAAGCTCAAATATCTGAAGATGATCAGCAATAGATTTTATGGACACCTACCCAGTGAAATCGGGAGATTATCTATGCTTGTGGAGTTAGATCTTAGTAACAACAATCTTTCAGGTACCATACCTTATGAGATAGGTGACTACTTAAAAGACCTTGAACGATTGCATTTGCAAGGTAACAGCCTAACAGGATCTATTCCTCCAAACATCTTCAACATCTCAGGGTTACAAAGTCTGTCACTATCAAATAACCACCTATCAGGCAATCTTCCAATTCATGTGCATCATAGCCTCTCCAATCTTCAATTCCTGTACCTTTCAGGGAACGATCTTAGTGGAGAAATTCCAAGCACCCTTTTCAATGCTTCAATGCTACTTGAGCTAGTACTTGCCAACAATTCATTCTCAGGAGTTATACCTGATTCAATTGGGAACTTGAGAAGCCTTGAACTCCTATATCTAATAGGAAACAGGTTAACTAGTGATCCTGCTTCAACAGAAATTGGCTTCCTCACTTCATTGACAAAGTGTAGGCATTTGGAAAAGATTTTGATATCAATTAACCCTCTTAATGGAACACTTCCAAGTTCTATTGGAAACCTTTCTAGCTCTCTTCAAACTTTTGATGCCTGGAGTTGTAACATCAAGGGTAAAATTCCTTCAGAGATTGGCAATTTAAAGAATTTGTTTGACATAAATCTGAATGACAACCAACTTATTGGAGAGATTCCAAGAACAGTTGGCTCTTTGGTGCTTCTCCAACGTTTGGATCTTTCAATGAACAAGCTAAATGGCTCTCTCCCAGGTCAGATTTGTCAGTTGATAAATTTGAATCAGTTGCATCTTAGCAGTAATAATCTTTTTGGGTCAGTTCCAGGATGCTTGGAGCATCTCATTTCTCTAAGAAAATTTTCTTTAGATTCCAATAACCTGAACTCTTCAATACCTTCTTCTCTATGGAGCCTCAGTGATATCTTGGAGGTGAACTTATCCTCAAATGGGTTTGGTGGCTCTTTGCCATCTGAGATAGGTGGCATGAATGCTGTGATAAAACTGGATATATCAAATAATCAACTTTCAGGAAACATTCCTAGTAGGATTGGTGCCTTGCAGAGTATAATGAACCTCTCATTAGCTAATAACATGTTACAAGGGCCTATTCCTGATTCAGTTGGAAATATGTTAAGCCTGGAATTTCTGGACCTTTCCCATAATCTTTTATCAGGCACCATCCCCAAGTCAGTTGAGAAACTTGTTTATCTCAAGTTTATCAACTTGTCTTATAATAGGCTGCAAGGAGAAATCCCTTCTGGTGGCAATTTTGCAAATTTCACAGCTCAATCATTCATCATGAATGATGCACTCTGTGGGAGACCTAATCTAGGAGTCCCACCATGTCCCAATAATGAAGCTGAACATAGCAGGACAACCAAAAATCTTGTACTGAAATTGATAATACCCTTAATTGTATCAAGCATCTTTGTTGGCTGTGCAATTATTCTAATATGCAGGAGAAAACACAGAAAAGGTTCAGCAGAGATAGACTTGCCATCATTGCAATTTCCAAATCGAATTTCCTACTATGAACTTCTCGAGGCAACACAGAAATTTGATCACAGCAATCTTATTGGAAGAGGAGGTTTTGGTTCTGTCTTCAGAGGCCAGCTTTCAGATGGAGTGGTGATTGCAGTTAAGGTATTCAATTTGGAGATGCAAGAAGCATCAAGGAGTTTTGACAGAGAATGCGAAGCCATGCGCAATCTTCGCCATCGAAATCTAGTTAAAGTAATCACTAGCTGTTCAAATGCCATTGATTTCAAAGCCTTGGTAATGGAATTTGTACCAAATGGGAACCTGGAGAAGTGGTTGTACTCTCATAACTATTTCCTAACTTTCTTACAAAGGTTGGACATAGTAATAGATGTTGCATCTGCCTTGGAGTATCTCCATCATGGTAACTCAAAACCTGTGGTACACTGTGACTTGAAGCCAAGCAATGTTTTGTTGGATGAAAATATGGTTGCTCATGTCTGTGACTTTGGTATTGCTAAACTCTTGGAAGAAGGACAATCTCAAATGCATACCAACACCTTAGCAACTCTTGGTTATATTGCTCCAGAATATGGATCAGAAGGTGTTGTGTCCATTAAAGGAGATGTCTATAGCTATGGAATTATGCTGATGGAAGTATTTACAAGAAAGAAACCAGTTGATGAAATGTTTGCAGAAGGACTAAGCTTAAGGTCATGGATCCAAGAGTCAATGCCACGTGAGGTTATTCAGGTTGTAGATCCCAATTTGATGGAGGGAGAGGAACAGCTGATTTTTGCCAAAGAAGCAGCATTGTCAAGTACCATGGAGTTGGCTTTGAATTGCTCTGCAGACTCCCTTGATGAGAGAATGAGCATGGAAGAAGTCTTAGGTCGACTAAAGAAAATCAAAACCATATTTCTACAGATGGCAGAAGAAAATTCAAGTAATGAAAATCCATGA 3435 0.3939 MEKASCLFFFTFVLSFHHFMASSEISKSNFGVDQSALLALKSYLTLDPQHILSNNWSTSVSVCKWFGVTCDANGRVMALTLPNMSLNGTLPPNLGNLSFLVNLDLHNNSFHGTVPKELTVLPRLKVVNLCTNKLGGNFPTWIGELSKLQNLSLCNNSFLGSIPASLSNLSELESLDLSFNLIGGSIPPALGRLHNLKVLELEHNKLSSDIPSSIFNISTLQEIDFAYNSLSGSIPEKVGDASQLRSINLSKNNLSGSIPSSLFNISTLEEIQFIYNNLSGPLPYDMCHGFPMLQKLDLSGNAFYGQIPQSLLQCKKLKYLKMISNRFYGHLPSEIGRLSMLVELDLSNNNLSGTIPYEIGDYLKDLERLHLQGNSLTGSIPPNIFNISGLQSLSLSNNHLSGNLPIHVHHSLSNLQFLYLSGNDLSGEIPSTLFNASMLLELVLANNSFSGVIPDSIGNLRSLELLYLIGNRLTSDPASTEIGFLTSLTKCRHLEKILISINPLNGTLPSSIGNLSSSLQTFDAWSCNIKGKIPSEIGNLKNLFDINLNDNQLIGEIPRTVGSLVLLQRLDLSMNKLNGSLPGQICQLINLNQLHLSSNNLFGSVPGCLEHLISLRKFSLDSNNLNSSIPSSLWSLSDILEVNLSSNGFGGSLPSEIGGMNAVIKLDISNNQLSGNIPSRIGALQSIMNLSLANNMLQGPIPDSVGNMLSLEFLDLSHNLLSGTIPKSVEKLVYLKFINLSYNRLQGEIPSGGNFANFTAQSFIMNDALCGRPNLGVPPCPNNEAEHSRTTKNLVLKLIIPLIVSSIFVGCAIILICRRKHRKGSAEIDLPSLQFPNRISYYELLEATQKFDHSNLIGRGGFGSVFRGQLSDGVVIAVKVFNLEMQEASRSFDRECEAMRNLRHRNLVKVITSCSNAIDFKALVMEFVPNGNLEKWLYSHNYFLTFLQRLDIVIDVASALEYLHHGNSKPVVHCDLKPSNVLLDENMVAHVCDFGIAKLLEEGQSQMHTNTLATLGYIAPEYGSEGVVSIKGDVYSYGIMLMEVFTRKKPVDEMFAEGLSLRSWIQESMPREVIQVVDPNLMEGEEQLIFAKEAALSSTMELALNCSADSLDERMSMEEVLGRLKKIKTIFLQMAEENSSNENP* 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1073 1144 Gene3D Ribonuclease Inhibitor 145 220 IPR032675 -
Dod03g1073 1144 Pfam Leucine rich repeat 366 425 IPR001611 GO:0005515
Dod03g1073 1144 Pfam Leucine rich repeat 122 182 IPR001611 GO:0005515
Dod03g1073 1144 Pfam Leucine rich repeat 686 745 IPR001611 GO:0005515
Dod03g1073 1144 Pfam Leucine rich repeat 242 302 IPR001611 GO:0005515
Dod03g1073 1144 PANTHER - 196 408 - -
Dod03g1073 1144 PANTHER - 7 233 - -
Dod03g1073 1144 PANTHER - 363 1133 - -
Dod03g1073 1144 SUPERFAMILY L domain-like 362 516 - -
Dod03g1073 1144 SUPERFAMILY RNI-like 79 377 - -
Dod03g1073 1144 SMART serkin_6 851 1131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g1073 1144 ProSitePatterns Serine/Threonine protein kinases active-site signature. 971 983 IPR008271 GO:0004672|GO:0006468
Dod03g1073 1144 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 196 408 - -
Dod03g1073 1144 Pfam Protein tyrosine and serine/threonine kinase 855 1066 IPR001245 GO:0004672|GO:0006468
Dod03g1073 1144 PRINTS Leucine-rich repeat signature 708 721 - -
Dod03g1073 1144 PRINTS Leucine-rich repeat signature 341 354 - -
Dod03g1073 1144 Gene3D Ribonuclease Inhibitor 364 487 IPR032675 -
Dod03g1073 1144 Gene3D Ribonuclease Inhibitor 488 782 IPR032675 -
Dod03g1073 1144 Gene3D Ribonuclease Inhibitor 221 363 IPR032675 -
Dod03g1073 1144 Gene3D Transferase(Phosphotransferase) domain 1 928 1142 - -
Dod03g1073 1144 SUPERFAMILY L domain-like 517 774 - -
Dod03g1073 1144 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 7 233 - -
Dod03g1073 1144 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 363 1133 - -
Dod03g1073 1144 ProSitePatterns Protein kinases ATP-binding region signature. 857 879 IPR017441 GO:0005524
Dod03g1073 1144 SMART LRR_typ_2 363 387 IPR003591 -
Dod03g1073 1144 SMART LRR_typ_2 412 436 IPR003591 -
Dod03g1073 1144 SMART LRR_typ_2 290 314 IPR003591 -
Dod03g1073 1144 SMART LRR_typ_2 612 636 IPR003591 -
Dod03g1073 1144 SMART LRR_typ_2 193 217 IPR003591 -
Dod03g1073 1144 SMART LRR_typ_2 169 192 IPR003591 -
Dod03g1073 1144 SMART LRR_typ_2 338 362 IPR003591 -
Dod03g1073 1144 SMART LRR_typ_2 708 732 IPR003591 -
Dod03g1073 1144 SMART LRR_typ_2 460 483 IPR003591 -
Dod03g1073 1144 SMART LRR_typ_2 540 564 IPR003591 -
Dod03g1073 1144 SMART LRR_typ_2 588 611 IPR003591 -
Dod03g1073 1144 ProSiteProfiles Protein kinase domain profile. 851 1132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g1073 1144 Gene3D Ribonuclease Inhibitor 32 144 IPR032675 -
Dod03g1073 1144 SUPERFAMILY Protein kinase-like (PK-like) 830 1124 IPR011009 -
Dod03g1073 1144 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Dod03g1073 1144 SMART LRR_sd22_2 363 389 - -
Dod03g1073 1144 SMART LRR_sd22_2 193 219 - -
Dod03g1073 1144 SMART LRR_sd22_2 708 731 - -
Dod03g1073 1144 SMART LRR_sd22_2 145 171 - -
Dod03g1073 1144 SMART LRR_sd22_2 564 593 - -
Dod03g1073 1144 Gene3D Phosphorylase Kinase; domain 1 834 927 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1073 Dod-Chr3 13047818 13055313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1073 9 1128 Receptor kinase-like Gene Family AT5G46330 33.790 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dod03g1073 Pkinase 6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1073 - K13420 lja:Lj6g3v0938090.1 1157.51