Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1051 ATGATGGCGCATTCAGCTGAACCCTCATCATCTTTGAGCTTTACATCATCTTCCCACTTATCAAATGGCTCTGTTAGCCACAACAACAGATGCTCCTCTTATGGTTCTGACCCTGGACTTAGCCTTGAGGTTATCAGCTTGAGCAAGCTTAGCTCTAACTTGGAGCAGCTTCTGTTGATTGATTCTGATTGTGACTATAGTGATGCTGACATCCTTGTGGAGGGAACTCCAGTTAGTGTTCATCGATGTATTCTGGCCTCTAGGAGCAAGTTCTTCCATGAATTGTTCAAGAGCGAGAAAGGGCCCTCAGAGAAAGAAGGGAGATTGAAGTACTCCATGACTGATTTGTTGCCTTATGGAAATGTTGGATATGAGGCCTTCCAAATTTTCCTTGGTTATATATATACTGGTAAACTCAAGCCCTCTCCAATGGAGGTGTCTACATGCGTTGACAATGTGTGTGCTCATGCTGCTTGTAGTCCTGCAATTAACTTTGCTGTGGAGTTAATGTATGCCTCTTCCATTTTTCAAATACCGGAGCTGGTATCACTTTTCCAGCGACGTCTTCTTAACTTTGTAGGGAAGGCTCTTGTGGAAGATATCATCCCAATCCTCATGGTTGGTTTCCATTGTAAATTGAGTCAACTTGTCACTCAATGTGTTGACAGGGTGGTACGCTCAGACCTTGACCAGATCTCAATTGAGAAAGAGCTTCCCCATGAGCTCTTGGAACAAGTTAAATTACTCCGCCGCAGCCAACAGCAAGATGTTGAAAATGATGCTTCTGAAGTGGATGACCCTTTGCTCCTAAAACGGATCACTAGAATACATAAGGCATTGGACTCAGATGATGTTGAGCTTGTTAAACTTCTTTTAAATGAGTCGGACATTACTTTAGATAGAGCCGGTGCTCTCCATTATGCTGCAGCCTACTGTGACCCCAAGGTTGTTTCTGAGGTACTTGGTTTGGGTCTAGCTGATGTCAATCTTCGTGATGCTCGGGGTTATACTGTGCTTCACATCGCTGCCATGCGTAAGGAGCCTTCCATTATAGTATCACTTCTATCAAAAGGGGCCTGTGCATCAGATTTGACTTTGGATGGCCAGAGTGCAGTTAGTATTTGCAGGAGGTTGACAAGGCCGAAGGATTATCATGCAAAAACAGAACAGGGGAAGGAAACAAACAAAGATAGGATATGCATCGATGTTCTTGAAAGAGAAATGCGGAGGAATCCAATGGCTGGGGATGTAGCTACATCTTCCCACACAATGGCTGATGATCTCCACATGAAGCTACTATACCTTGAGAACAGAGTGGCATTTGCAAGACTATTCTTCCCTTCAGAAGCCAAACTAGCCATGGACATTGCACATGCAGAGACAACATCGGAGTTTGCTGGTCTTACCGCATCAAAAGGTTCAAATGGCAACCTAAGGGAAGTTGATCTCAATGAGACTCCCATAATGCAAAACAAAAGACTTCTTTCTAGGATGGAAGCCCTTATGAAAACTGTCGAGATGGGGCGGCGCTATTTCCCTCATTGCTCAGAAGTACTGGATAAGTTCATGGAGGATGATCTCCCTGATTTGTTTTACCTAGAAAAGGGCACCCAAGAAGAGCAGCGAATCAAGAGGACGCGGTTCATGGAGCTCAAAGATGATGTCCACAAGGCCTTCTCCAAGGACAAGGCCGAGTTTAGCCGCTCTGGAATTTCATCTTCATCATCCTCATCATCCCTCAGAGACTCTGTACATTACAAGGCTAGAAAAGTGTGA 1776 0.4454 MMAHSAEPSSSLSFTSSSHLSNGSVSHNNRCSSYGSDPGLSLEVISLSKLSSNLEQLLLIDSDCDYSDADILVEGTPVSVHRCILASRSKFFHELFKSEKGPSEKEGRLKYSMTDLLPYGNVGYEAFQIFLGYIYTGKLKPSPMEVSTCVDNVCAHAACSPAINFAVELMYASSIFQIPELVSLFQRRLLNFVGKALVEDIIPILMVGFHCKLSQLVTQCVDRVVRSDLDQISIEKELPHELLEQVKLLRRSQQQDVENDASEVDDPLLLKRITRIHKALDSDDVELVKLLLNESDITLDRAGALHYAAAYCDPKVVSEVLGLGLADVNLRDARGYTVLHIAAMRKEPSIIVSLLSKGACASDLTLDGQSAVSICRRLTRPKDYHAKTEQGKETNKDRICIDVLEREMRRNPMAGDVATSSHTMADDLHMKLLYLENRVAFARLFFPSEAKLAMDIAHAETTSEFAGLTASKGSNGNLREVDLNETPIMQNKRLLSRMEALMKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTQEEQRIKRTRFMELKDDVHKAFSKDKAEFSRSGISSSSSSSSLRDSVHYKARKV* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1051 591 Gene3D - 269 408 IPR036770 -
Dod03g1051 591 Pfam Domain of unknown function (DUF3420) 228 277 IPR024228 -
Dod03g1051 591 PANTHER REGULATORY PROTEIN NPR3 11 579 IPR044292 GO:0009862|GO:2000022|GO:2000031
Dod03g1051 591 ProSiteProfiles BTB domain profile. 67 143 IPR000210 GO:0005515
Dod03g1051 591 PANTHER REGULATORY PROTEIN NPR3 11 579 - -
Dod03g1051 591 Pfam NPR1/NIM1 like defence protein C terminal 376 578 IPR021094 -
Dod03g1051 591 SUPERFAMILY Ankyrin repeat 272 377 IPR036770 -
Dod03g1051 591 MobiDBLite consensus disorder prediction 560 591 - -
Dod03g1051 591 CDD BTB_POZ_NPR_plant 49 193 - -
Dod03g1051 591 SUPERFAMILY POZ domain 51 191 IPR011333 -
Dod03g1051 591 SMART BTB_4 67 193 IPR000210 GO:0005515
Dod03g1051 591 Pfam Ankyrin repeats (many copies) 303 348 IPR002110 GO:0005515
Dod03g1051 591 ProSiteProfiles Ankyrin repeat region circular profile. 334 359 - -
Dod03g1051 591 SMART ANK_2a 300 330 IPR002110 GO:0005515
Dod03g1051 591 SMART ANK_2a 271 299 IPR002110 GO:0005515
Dod03g1051 591 SMART ANK_2a 334 366 IPR002110 GO:0005515
Dod03g1051 591 Gene3D Potassium Channel Kv1.1; Chain A 41 225 IPR011333 -
Dod03g1051 591 Pfam BTB/POZ domain 65 181 IPR000210 GO:0005515
Dod03g1051 591 MobiDBLite consensus disorder prediction 566 582 - -
Dod03g1051 591 ProSiteProfiles Ankyrin repeat profile. 334 359 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1051 Dod-Chr3 12806034 12810197 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dod03g1051 NPR1_like_C 1.4e-97 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1051 K14508 - gmx:100217338 989.178