Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1049 ATGGAAACCGGCGGTGGCGGTGACGGAAGAGGACGTCAGCAACCGCCGGAGCCCATTCTCCAACCACAATGGCGCCGTCCCTCACCGTTAGTGCCGACACCCTCAGACCTCACTCTTCAACCCGAGTGGCGGCGATCCAGACCACCACCACCACCAACACCAACCGCTTCTTCTCACGCGCCTCCTTCTCAGCCTTCGAATTCCGGTGGTGCCCGCAGTGAAGAAGCGCGTGAGCTTCTTCTCCCCCAACCAGAATGGCGGCGCTCGGGACCACCGACAACAACAACTTCTTCTTCTTCCTCCTCTGGTTCGGAAGCGGAATGGAGGCTACCGAGGCCTACTTCTGCCTTCTGGAACCAAAACCAAGGTGGTCGGAGAGCGCAGGGTACGAGCTCCCGTGGAGTTGAGAGAGTTGGAGAAAGCAGAGAAGGTTCTAGAACTTCTAGTGCTGCTGATGATGCTGCGTTTTGGCGCCGGCCTCCTCCCCCTCCTCCTCCTCCTCCAGATTCTGAAGTTCTCAAACTAGAAAGATTACAAATATCGAAACATTTAGCTACACCATCTTGTACCCTCGAAAAAAAGGATAAGCTTTCACCCATTCGAAGACCTGACAATGGTGGCACAATAGCAATTTTAACTAGCAGACTTCGTGTTAATCATTTCCCTGTTAAGTTCAATCCAGAAAGTGTAATATTGCATTATAATGTTGCCGTGAAACCAAAGCTTTCCTCAAAGCATGGCCAGCCTCATAAATTATCAAAGTCTGATCTTTCCACGATTAGAGATAAACTGTTTTCGGATGATCCTGAGAGATTACCCTTGGATATGACTGCATATGACGGTGCAAAAAATATCTTTAGTGCAATACAATTACCAGAAGAAACCTTTACTGTGGAGATCTCTGAAGGAGAGGATGAAAAGACCCTTACTTATAGTGTTACTTTAACACTTGTAACTAAACTCCGACTTCGCAAGCTAATGGACTATCTTAGTGGTCACAGCCTCTCAATTCCTAGGGATATTTTACAAGGGATGGATGTGGTGGTGAAAGAGAATCCGGTTAGGCACGCTGTTGCAGTGGGACGAAACTTCTATCCCACAAATCCTCCTTTGGCAATGAAGGATCTTAACCATGGCATAATTGCCATTGGGGGGTTTCAGCACAGTTTAAAGCCTACATCTCAGGGTCTGTCATTATGTGTAGATTACTCAGTGTTGGCTTTCCGAAAGCAAATGTCAGTCTTGGATTTCTTGCATGAGCATATTGATAATTTTAAGTTGGATGAATTTGAATACTTCAGGAAATATGTTGAGGAGGCACTTATTGGATTGAAAGTTAGTGTGACTCATCGTAAATCCAAACAAAAATACACTGTTGTGAGATTAACACCTGAGAATACAAGGTATGTCACTTTCCCCATTGACAATGCTGAGGGGTGGAGTCTCTCAAAGAATGTTAGTCTTCTTAGCTTTTTTAGAGACAAATATGGCAAGGACATTGTATACAAAGATATTCCCTGTTTAGATTTAGGGAAAGGCAACAAGAAGAACTATGTACCTATGGAATTCTGTGTTTTGGTTGAGGGCCAAAAATATCCCAAAGAGCGTTTGCACGGGGTTTCTGCAAAGACATTGAAAGCACTGTCACTAGCTCACCCAAATGAAAGGGAGTGTGCAATACAAAAGATGGTGCAATCAAGTGATGGACCCTGCGGCGGTGGTGTTATTACAAATTTCGGAATGAGTGCAAGCACAACCATGACAACCATTCTAGGACGTGTCATTGGCCCCCCAGAATTAAAGTTAGGTGATCCAGACGGCAAGATTATCAAGATAGCAGTGGATCTAGAGAAATGTAACTGGAACCTTGTTGGAAGATCAATGGTAGAAGGCAAACCAGTTGAGTATTGGGCCATTCTTGACTTCACCTGTTTTGGGTCATACAAGTACAAATTAAAAGAGAACGAATTCATTCAAAAGCTTATTGGTAAATACAAGAAAATGGGTATACGCATGCAGGAGCCCATTTGGTACGAAGAATCTTCAATGAAGATACTTGCAAGTCATGATTTGCTATCTGAAGTACTTGAAAAAGTTATCAACACTTGTAAATATAAACACGGTCGACTGCAATTTCTTCTGTGTGTAATGGCTAAAAAAAGTCCAGGTTACAAGTACCTCAAGTGGATTTCTGAGACCAAAGTTGGTATAGTTACTCAATGCTGCTTGTCTCATAGTGCTAATGAAGGGGATGACCTATTTTATACTAATCTAGCTCTCAAGATCAATGCCAAGCTTGGAGGCAGTAATGTGGAGCTCAGTAATAGGCTTCCTTACTTTGAGGGTGAAGGACATGTTATGTTTGTTGGGGCTGATGTCAATCATCCTGGTACTCGAGACACCAAGAGTCCATCAATTGCTGCTGTGGTTGCAACTGTTAATTGGCCTGCTGCAAATTGTTATGCAGCTCGTGTTTGCTCTCAGCACAATCGGAGTGAGAAAATATTGAAGTTTGGGGAGGTTTGTTTTGAGCTTGTTGCATGTTATAGTAGGATTAATGGAGTCAGGCCGGAAAAAATTGTTGTTTTTCGTGATGGGGTGAGTGAGTACCAGTTTGATATGGTTCTTAATGAAGAGCTACTGGATTTGAAGAGAGAATTTCAAAGAATGAATTACTTCCCAACCATCACTCTCATAGTAGCACAAAAACGTCATCAAACACGATTCTTTCCAGAGGGTTGGAGGGATGGGTCTTCCAGCGGCAATATTTTGCCAGGAACAGTTGTTGACACCAAAGTTACCCACCCTTTTGAGTTTGACTTTTACCTTTGTAGTTACTATGGAAGCATAGGTACAAGCAAGCCCACTCACTACCATGTTTTATGGGATGAACACAAGTTCACATCTGACAAATTGCAGAAGCTCATATATGAGATGTGCTTCACCTTTGCAAAGTGCACTAAACCTGTATCTTTAGTCCCTCCAGTGTACTATGCTGACCTTGCTGCTTATAGAGGACGACTATACCATGAAGCAAGGATTGGGATGCAATCTCCAAAATCAGCAGCATCTTCTTCTAAGTCTTCTTCATCGGCTTCATCAACAGCTTCATTTGAGCAGGGATTTTACAGGTTGCATACTGACCTGGAAAACATAATGTTCTTCATCTAA 3171 0.4339 METGGGGDGRGRQQPPEPILQPQWRRPSPLVPTPSDLTLQPEWRRSRPPPPPTPTASSHAPPSQPSNSGGARSEEARELLLPQPEWRRSGPPTTTTSSSSSSGSEAEWRLPRPTSAFWNQNQGGRRAQGTSSRGVERVGESREGSRTSSAADDAAFWRRPPPPPPPPPDSEVLKLERLQISKHLATPSCTLEKKDKLSPIRRPDNGGTIAILTSRLRVNHFPVKFNPESVILHYNVAVKPKLSSKHGQPHKLSKSDLSTIRDKLFSDDPERLPLDMTAYDGAKNIFSAIQLPEETFTVEISEGEDEKTLTYSVTLTLVTKLRLRKLMDYLSGHSLSIPRDILQGMDVVVKENPVRHAVAVGRNFYPTNPPLAMKDLNHGIIAIGGFQHSLKPTSQGLSLCVDYSVLAFRKQMSVLDFLHEHIDNFKLDEFEYFRKYVEEALIGLKVSVTHRKSKQKYTVVRLTPENTRYVTFPIDNAEGWSLSKNVSLLSFFRDKYGKDIVYKDIPCLDLGKGNKKNYVPMEFCVLVEGQKYPKERLHGVSAKTLKALSLAHPNERECAIQKMVQSSDGPCGGGVITNFGMSASTTMTTILGRVIGPPELKLGDPDGKIIKIAVDLEKCNWNLVGRSMVEGKPVEYWAILDFTCFGSYKYKLKENEFIQKLIGKYKKMGIRMQEPIWYEESSMKILASHDLLSEVLEKVINTCKYKHGRLQFLLCVMAKKSPGYKYLKWISETKVGIVTQCCLSHSANEGDDLFYTNLALKINAKLGGSNVELSNRLPYFEGEGHVMFVGADVNHPGTRDTKSPSIAAVVATVNWPAANCYAARVCSQHNRSEKILKFGEVCFELVACYSRINGVRPEKIVVFRDGVSEYQFDMVLNEELLDLKREFQRMNYFPTITLIVAQKRHQTRFFPEGWRDGSSSGNILPGTVVDTKVTHPFEFDFYLCSYYGSIGTSKPTHYHVLWDEHKFTSDKLQKLIYEMCFTFAKCTKPVSLVPPVYYADLAAYRGRLYHEARIGMQSPKSAASSSKSSSSASSTASFEQGFYRLHTDLENIMFFI* 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1049 1056 SMART PAZ_2_a_3 412 545 IPR003100 GO:0005515
Dod03g1049 1056 MobiDBLite consensus disorder prediction 157 171 - -
Dod03g1049 1056 Gene3D - 782 1056 IPR036397 GO:0003676
Dod03g1049 1056 Pfam Piwi domain 713 1007 IPR003165 GO:0003676
Dod03g1049 1056 CDD Piwi_ago-like 575 1009 IPR045246 -
Dod03g1049 1056 CDD PAZ_argonaute_like 412 527 - -
Dod03g1049 1056 MobiDBLite consensus disorder prediction 1 171 - -
Dod03g1049 1056 Pfam N-terminal domain of argonaute 215 349 IPR032474 -
Dod03g1049 1056 Gene3D paz domain 406 532 - -
Dod03g1049 1056 MobiDBLite consensus disorder prediction 88 129 - -
Dod03g1049 1056 Gene3D - 594 775 - -
Dod03g1049 1056 SUPERFAMILY PAZ domain 407 566 IPR036085 GO:0005515
Dod03g1049 1056 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 81 1055 - -
Dod03g1049 1056 MobiDBLite consensus disorder prediction 44 59 - -
Dod03g1049 1056 ProSiteProfiles Piwi domain profile. 712 1011 IPR003165 GO:0003676
Dod03g1049 1056 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 81 1055 - -
Dod03g1049 1056 SMART DUF1785_2 358 411 IPR014811 -
Dod03g1049 1056 SMART Piwi_a_2 712 1010 IPR003165 GO:0003676
Dod03g1049 1056 Pfam PAZ domain 431 540 IPR003100 GO:0005515
Dod03g1049 1056 SUPERFAMILY Ribonuclease H-like 705 1011 IPR012337 -
Dod03g1049 1056 Pfam Argonaute linker 1 domain 359 410 IPR014811 -
Dod03g1049 1056 ProSiteProfiles PAZ domain profile. 412 528 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1049 Dod-Chr3 12772506 12777542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1049 216 1033 Eukaryotic Initiation Factors Gene Family AT1G48410 35.328 6.25e-144 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1049 K11593 - gmx:100783571 1555.42