Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1047 ATGGTGGATCAGGCTGGTTTAGGTGGTGGAGCATGTGTTAGTGTTGGAGGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGGGGGGATGTAGACGGTGAAGAGGAAGAAGTGTGGAAAGAAACTGAGGAGCCAGTAGTGGTGGTGGGAGAGTTGAAGGATGAGCTTGATGAGTTCTCAGTGAACATGTTCTTCAAAGGGTTGTCAGTGGCTGCTGTTGAGAATTCAATTTCTGGGTTATCTGGGATTGGAGTGTTCATGGAAAGATCATCGGGTTTTCCCGCTATTCATGTGCAGAAAAGGCTTGACTTTTATGCTGAGGAGTCGCTTGTTGAGTACTTTGCTCTCATGGATGGCTTGCGGGAAGCTATGCAGCACAAGATCCGCAGGGTTTATGCTTTCACAGATTCTGAGTTGCTGTACAATCAGATAACAAATGAGCAAAATCTTAAGATGCCGCTTTTGATGGCACTGAGAAAAAGGATTCTGGAACATGCCAACAATTTTGAAGCTTTTGTTCTGAAGCTTATACCCAGTGCTGATCTTGAGCAGCCATTGCAATTGGCCAAAGTAGCTATTGGACTTGTTACCTTCCCTGTCAATGGTGAGAGGTCACTTGAGTACTGTTCTATTTGTTGGGAGGATAAGCCACTGCCATTTATGATCACCATTGAATGTTCACACACGTTCTGTTCACATTGCCTGAGGTCTTATGCTTATGGAAAAGTACAATCTTGTCAAGTCCCTATAAAATGTCCTCAACCAGCATGCAGATACTGCTTTTCTGTGACTGAATGCCGGTCTTTTCTTCCATTCACTTCTTTTGAATCATTGGAGCAAGCCCTTGCAGAAGCAAATTTTCTGCACTCCAATAGAATTTATTGTCCATATCCAAATTGTTCTGTTATTATTGATTCTAGTGAATGTTTGTCGGCTAGGTCCAGTTCGTCTAGTCTGTCAAACAATTCTTGTGTTGAGTGTCCTGTTTGTTGGGGGCTTATCTGTGTGAATTGCGAGGGCCCTTGGCATTCTAATAAGAACTGTGAAGAATACCAGAATCTACCGGAGGAGAGTTATGCTTCTGACATTACATTTAATCTTCTTCCCCGGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCATAGAACCATTGAGCTTTCTCATGGTTGTTATCACATGACATGCTGGGATGGCCAACAAACATGTCAATGTGCATATTGGGATGAAGACAGCCATGAAGACTCGATGGCAAACTCTCTCCAAGAATCTGAGCAATGCGCATGGGAGGCTTTCAATTTCGCTCTCCATGATCATGGACGCATGCTCGGAACAGGAACGGTCGCAGCTCGCGCTTATACAAAGGTTCCTAGCTGGCGGATTTAG 1383 0.4418 MVDQAGLGGGACVSVGGEEEEDEFCSCWGDVDGEEEEVWKETEEPVVVVGELKDELDEFSVNMFFKGLSVAAVENSISGLSGIGVFMERSSGFPAIHVQKRLDFYAEESLVEYFALMDGLREAMQHKIRRVYAFTDSELLYNQITNEQNLKMPLLMALRKRILEHANNFEAFVLKLIPSADLEQPLQLAKVAIGLVTFPVNGERSLEYCSICWEDKPLPFMITIECSHTFCSHCLRSYAYGKVQSCQVPIKCPQPACRYCFSVTECRSFLPFTSFESLEQALAEANFLHSNRIYCPYPNCSVIIDSSECLSARSSSSSLSNNSCVECPVCWGLICVNCEGPWHSNKNCEEYQNLPEESYASDITFNLLPRNKRWKRCQQCHRTIELSHGCYHMTCWDGQQTCQCAYWDEDSHEDSMANSLQESEQCAWEAFNFALHDHGRMLGTGTVAARAYTKVPSWRI* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1047 460 SUPERFAMILY RING/U-box 358 409 - -
Dod03g1047 460 SMART ibrneu5 276 348 IPR002867 -
Dod03g1047 460 ProSiteProfiles Zinc finger RING-type profile. 209 253 IPR001841 -
Dod03g1047 460 Pfam Reverse transcriptase-like 76 178 IPR002156 GO:0003676|GO:0004523
Dod03g1047 460 SUPERFAMILY RING/U-box 204 285 - -
Dod03g1047 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 288 IPR013083 -
Dod03g1047 460 Gene3D - 70 195 IPR036397 GO:0003676
Dod03g1047 460 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 20 432 IPR031127 GO:0004842|GO:0016567
Dod03g1047 460 SUPERFAMILY Ribonuclease H-like 79 178 IPR012337 -
Dod03g1047 460 ProSiteProfiles TRIAD supradomain profile. 205 427 IPR044066 -
Dod03g1047 460 ProSitePatterns Zinc finger RING-type signature. 226 235 IPR017907 -
Dod03g1047 460 SUPERFAMILY RING/U-box 281 353 - -
Dod03g1047 460 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 20 432 - -
Dod03g1047 460 Pfam IBR domain, a half RING-finger domain 289 348 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1047 Dod-Chr3 12744781 12748860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1047 36 395 C3H Transcription Factor Family AT2G19610 22.691 3.82e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1047 - - gmx:100784508 623.239