Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0963 ATGGGGAATGTGAATGAGAGAGAAGTGAATGGTACTGAAACTGGGGCAGGGGAGGAAGAAGAAGAAGAAGGTGGTGGTGATGACAGCGTGAGTGATGGAGCTGGCAATCGTGCCCCTTCTGAGTTGATGGGTCAGTCTCCACCTGCTAGCCCTAGAGCCACCCATTCTCCATTCATGTTCACCCCTCAAGTACCAGTGGTTCCTCTACAAAAACCTGATGAGATGCAGGTTCCAAGTCCTTCCTGGATGCAAACTATTTCAGGGTATGAAGATGTGTACAGTGAACTAGGAATTCCAACGATGATTACCTGGAGTTACGATGGGAAAGAAGTAGCTGTCGAGGGATCATGGGATAATTGGAAAACAAGAATGCCCTTGCAGAGATCGGGGAAGGACTTCACAATTATGAAGGTACTGCCATCTGGTGTTTTCGAGTTCAGATTTATTGTGGATGGACAGTGGAGGTATGCACCTGACTTGCCTTGGGCCCAAGATGATGCTGGGAATACTTGCAACATTCTGGACTTACAGGATTATGTACCTGAAGACATTGGAAGCATCTCTGGTTTTGACCCTCCTAAATCACCAGACTCTAGTTATAACAACTTACAACTTAGTTCTGAAGATTATGCGAAGGAACCTCCATTGGTTCCTCCATTCTTGCAAATGACACTTCTTAATGTTCCTTCAACAAATATGGAAATCCAACCTCCTATATCAAGACCTCAGCATGTAGTGCTAAATCATCTGTACATGCAGAAAGGAAAGAACAGCCCTTCAGTGGTTGCACTTGGTACAACTCATAGGTTTCTAGCCAAATATGTCACTGTGGTGCTGTACAAGTCTTTGCAGAGGTAA 858 0.4499 MGNVNEREVNGTETGAGEEEEEEGGGDDSVSDGAGNRAPSELMGQSPPASPRATHSPFMFTPQVPVVPLQKPDEMQVPSPSWMQTISGYEDVYSELGIPTMITWSYDGKEVAVEGSWDNWKTRMPLQRSGKDFTIMKVLPSGVFEFRFIVDGQWRYAPDLPWAQDDAGNTCNILDLQDYVPEDIGSISGFDPPKSPDSSYNNLQLSSEDYAKEPPLVPPFLQMTLLNVPSTNMEIQPPISRPQHVVLNHLYMQKGKNSPSVVALGTTHRFLAKYVTVVLYKSLQR* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0963 285 CDD E_set_AMPKbeta_like_N 99 175 - -
Dod03g0963 285 Gene3D - 188 283 - -
Dod03g0963 285 SUPERFAMILY AMPKBI-like 180 282 IPR037256 -
Dod03g0963 285 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 1 285 - -
Dod03g0963 285 SUPERFAMILY E set domains 98 183 IPR014756 -
Dod03g0963 285 Gene3D Immunoglobulins 93 180 IPR013783 -
Dod03g0963 285 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 211 281 IPR006828 GO:0005515
Dod03g0963 285 SMART AMPKBI_2 193 283 IPR006828 GO:0005515
Dod03g0963 285 Pfam Glycogen recognition site of AMP-activated protein kinase 98 177 IPR032640 -
Dod03g0963 285 MobiDBLite consensus disorder prediction 1 59 - -
Dod03g0963 285 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 285 IPR043554 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0963 Dod-Chr3 11755775 11759875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0963 55 178 Protein tyrosine phosphatase (PTP) family AT3G01510 27.692 2.26e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0963 K07199 - gmx:100777497 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2922 05 55158029 55161987 Dod03g0963 03 11755775 11759875 PCT