Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0931 ATGGTTTCGCTGGAGGAGTCTCGCTCCAACAATACGGTTACGAACCGTTTTCCGTTGACGCGGAGCTACCACTCCGTGTCGTCCATTTCCCCCAAAACGCACCGTCGTTTAGGGAGGTCCATGCGCACCATACGCTCCAACTTCTTCCAAGACGACAACAGCAGCAACAGCTGCTGCTCCTTCACCGAGAAATCCACCTGCCTATCGGAAAACCTCTCCGACTCCGTCGTCGACCTCCGCCTCGGCGAGCTTGCCTCCCGTAACGCCAACTCCCTCAGGCCTTCCTCCGCTGCCGCCGAGGAGGACCTTCTCGACCTCTCCCACGCCTTCAGCGACTTCTCTGCCTGTAGCAGCGACATCTCCGGCGAGCTCCAGCGCCTCGCTTGCCTACCATCGCCGGAATACGTCCAGAAGAACAGCAACGACGCCGGTAGCTCCGCCGCCGAGCAGGAGCCGGAGCCGGAGCCTTGCGTAGGGTTCCTACAGAGGGAGAATTTCTCAACGGAGATCATCGAGAGCATTTCGCCGGAAGATCTTCAGCCGACGGTGAAGCTCTGCATCGACGGCCTCCAGTCGCCGTCGATCGCCGTGAAGCGATCGGCGGCGGCTAAGCTCCGCTTGCTAGCGAAGAATCGCGCCGATAACAGAGTCCTAATCGGCGAGTCCGGTGCGGTTCCGGTTCTGGTTCCGCTTCTCCGGTGCAGCGATCCGTGGACGCAGGAGCACGCCGTGACGGCGCTGCTGAACTTGTCGCTCCACGAGGACAACAAGATGCTGATAACCAATGCCGGCGCAGTGAAGTCGCTGATCTACGTGCTGAAGACAGGGACAGAGACGTCGAAGCAGAACGCGGCGTGCGCGCTGCTGAGCCTTGCGCTCGTGGAGGAGAACAAGACCTCGATCGGCGCCTCCGGCGCGATTCCGCCGCTGGTTTCGCTGCTTATGAACGGTTCCAGCCGCGGGAAGAAGGACGCGCTGACGACGCTGTACAAGCTGTGTTCGGTGAAGCAGAACAAGGAGCGCGCGGTGAGCGCCGGAGCGGTGAGGCCGCTGGTGGAGCTTGTGGCGGAGCAGGGGACCGGTATGGCGGAGAAGGCGATGGTTGTGCTCAACAGCCTGGCGGCGATTCAGGAAGGGAAGGACGCGATTGTGGAAGAAGGTGGAATCGCTGCTCTCGTGGAAGCCATTGAGGATGGTTCGGTGAAGGGTAAGGAGTTCGCGGTTTTGACGCTTTTGCAGCTGTGTGGTGACAGTGCGAGGAACAGAGCGTTTCTTGTGAGGGAAGGTGGGATTCCTCCTCTTGTTGCACTTTCACAGACTGCGAGTGCTCGAGCTAAGCACAAGGCTGAAACGCTCCTTCGATATCTGAGAGAATCAAGACAAGAAGCATCCTCTTCAAGTTCTTAG 1407 0.597 MVSLEESRSNNTVTNRFPLTRSYHSVSSISPKTHRRLGRSMRTIRSNFFQDDNSSNSCCSFTEKSTCLSENLSDSVVDLRLGELASRNANSLRPSSAAAEEDLLDLSHAFSDFSACSSDISGELQRLACLPSPEYVQKNSNDAGSSAAEQEPEPEPCVGFLQRENFSTEIIESISPEDLQPTVKLCIDGLQSPSIAVKRSAAAKLRLLAKNRADNRVLIGESGAVPVLVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKTSIGASGAIPPLVSLLMNGSSRGKKDALTTLYKLCSVKQNKERAVSAGAVRPLVELVAEQGTGMAEKAMVVLNSLAAIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCGDSARNRAFLVREGGIPPLVALSQTASARAKHKAETLLRYLRESRQEASSSSS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0931 468 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 346 388 IPR000225 GO:0005515
Dod03g0931 468 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 223 265 IPR000225 GO:0005515
Dod03g0931 468 Gene3D - 164 325 IPR011989 -
Dod03g0931 468 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 1 465 - -
Dod03g0931 468 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 305 347 IPR000225 GO:0005515
Dod03g0931 468 Pfam Armadillo/beta-catenin-like repeat 296 334 IPR000225 GO:0005515
Dod03g0931 468 Pfam Armadillo/beta-catenin-like repeat 214 251 IPR000225 GO:0005515
Dod03g0931 468 Gene3D - 326 467 IPR011989 -
Dod03g0931 468 PANTHER U BOX DOMAIN-CONTAINING 1 465 - -
Dod03g0931 468 SMART arm_5 212 252 IPR000225 GO:0005515
Dod03g0931 468 SMART arm_5 253 293 IPR000225 GO:0005515
Dod03g0931 468 SMART arm_5 294 334 IPR000225 GO:0005515
Dod03g0931 468 SMART arm_5 335 375 IPR000225 GO:0005515
Dod03g0931 468 SMART arm_5 376 416 IPR000225 GO:0005515
Dod03g0931 468 SMART arm_5 417 458 IPR000225 GO:0005515
Dod03g0931 468 SUPERFAMILY ARM repeat 180 457 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0931 Dod-Chr3 11435604 11438956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0931 160 461 U-box Gene Family AT2G23140 48.065 6.90e-85 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0931 - - gmx:100806768 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2899 05 54903676 54904680 Dod03g0931 03 11435604 11438956 PCT