Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0920 ATGTCGATAGTCGAAACCCCCACCGCCGACAGCGTTTTCCAGCAGCGCGTCAACGATCAGCACCGCAACCACTCCTCCAAGCGGAAGCTCGACGACTACGGCCCCGCACTCGACGAAGACGACTTCGACGGCGCCGCCGTAATCCCCGCCCCCGAAAACCTCTATGCCACCGGATTCCTCCCAAGGGTGAAGCGAGATGAACCGAAGGCTGCCGTCAATCCTTCGTTCGTCGGCGCCGCCGCAGAGGCTAGGGTTTCCGGCTCGCAGTCCTCTTCCTCTTCGCGTCCTCCTCCGAGGACCGAGTCCGCTCGGTGCGAGTCGCGGTTACAGTTCTTCGTGCGAATGATGCCGCGAGGGAACACCGTGGTCATGCACGCTTCCCCGCACGACACCGTGAAATCGATCCACGAGCGAATCGGAGCGAATACCGGAATCCCTGTGTTCGAGCAGGGTTTGATTTACAGAGGGAAGCAGTTGCAGTGGGAACAGAGCCTTCAAGAGTGCGGAATCCAGAACGACGCGAACCTGCAGCTCGTTGGTCGCATGCGGAGCACGGAGCACCCTCAGGCATGGCAGGTAATGGACAAGATCGTTAACCTCGTTTGCAGGCTCTGCAGGGGTGAGGTTGTTCACGAAGCTTCGAAGCAGATCAAGATCCTCATCACCAACTACATGAACATGGCGCCGAAGGTTGATGACCATTCCGCTGCTGCTGCTGCTGCTTATTTCAACATCTTCGTTGCCTCCAGTGGCCCTTCCATGCTGGTAACTCTGTATGTCTCGCCCTTTGCTGGTAACAAGGAACGTGCTGATTGCTCCGTTAGGCATTTCTTGAATTCGTGCAGGCATAGTTTGTCTAAGGCTTGTCATGGCCAGTGTGCGAGGGTGGTGTTGGAGTTTTGTAAATTGCTTAGGAGGGTCGGGTTTGATGACCCTTTGTATATGTGTTGCCGCAGCACTCTGGGGTCTATGTTGGATGTTGCTATTTGCGATAGTTATGGTGGTCGGTATGGTAAAGGAGTAGGTGGAGTAGGAGGAGGGTGTATTTTGCTGCTAGATATTTGCCCCTTTGTTCGCGAGATTGCGATTAGACTGTTGAGGGATTTGGATTTGAGCATCGAGCACCCCACCACTAGTTTGGATCAGCTGCCGAGCGATGTTCGGGATTTTTCGGTTTTCTTGATCCCTCTGAGGAAAGGAATTGGGGACTTGCAAACTATGAGGGGTTTGGGGATGGATGAAAAGCGTCACAAGGACGCCTTGCTTGCAGAGGAGGTGGATTACCTTCATCATATATTTATTCAGTTGCTGAGCAAAATGGATGAGTGTCTTCGCTGCATGGAGGAATTCTTGGCTGGCAAGCAACAAGGGGAAGGGGATACCGGCTATTCAGCATGGTCTCAGTATCTTTCCATCTTGAAGGAATTGTGTCAAATCTCTAAGCTATATGATGGTGCTGAGGAAGAATTTTGGAAAGTTTTGATGAATCGACGTAGAATGGTGTGCCTGCTCATCATTCAATATGCAAAGAGAACTGATGATCATCATTGGATTCTTGACCACAAATGTGTGACCAATTTCGAGTCAAGGCGACATCTGGCAATGATGATGTTCCCTGATGTCAAAGAAGACTATGAGGAGTTACATGAGATGCTTATTGACAGGTCTCAGTTATTGGCTGAATCTTATGAGTACATAGCACAGGCAAAGCCTGCATCTCTCCATGCTGGTCTATTTATGGAATTCAAAAATGAGGAAGCTACAGGACCAGGTGTGCTGAGGGAGTGGTTTTTCTTGGTGTGTCGAGCAATATTCAATCCGGAAAATGCTCTTTTTGTGGCTTGCCCAAACGACCGCAGGAGATTTTACCCTAATCCTGCATCTAAGGTGGATCCTCTGCACCTAAAGTACTTCAGCTTCTCTGGTCGTGTTATTGCATTGGCTCTAATGCATAAGGTGCAAGTGGGTATCATTTTTGACCGTGTGTTTTTCGTACAATTAGCTGGAAAATCTGTTACTTTAGAAGATATACGGGAAGCAGATCCTTACTTGTATAGCAGCTGCAAGCAAATATTGGAGATGGATGCTGATTTCATTGATTCAGATGCATTAGGACTGACCTTTGTTAGAGAGGTGGATGAATTAGGCGACAGAAAAGTGGTTGAGCTTTGCTCTGGTGGGAAAAGCCTTGTAGTGAATAGTACGAACAGGGAGAAGTATGTTGATCTTCTCATAGAAAATCATTTTGTAAAATCAATATCTGAGCAGATATCACATTTTGCCAAGGGCTTTGGTGATATTCTTTCTAACTCAAGGCTACAGCAGTTCTTTGGAAGTTTAGAACCTGAAGATCTTGATTGGATGCTGCGTGGGAGTGAGAATATCATTTCTGTTGAAGATTGGAAGGCTCATACGGAGTATAATGGCTATAAAGAGACTGATTGTCAGATATCTTGGTTTTGGGAGATTGTTGGTAGAATGTCAGCAGAACAAAGGAAGGTTCTTCTGTTCTTTTGGACATCTGTGAAATATTTGCCAGTTGAAGGTTTCCATGGTTTGGCTTCCCGTCTATACATTTACAAGTCCTTTGAACCTGAAGATCGCCTTCCTTCATCTCACACATGCTTTTACCGGCTATGTTTCCCTGCATATTCATCTATGGCTGTCATGCAAGATCGTCTTGGAGTCATCACTCAAGAACACATTGGTTGCAGTTTTGGCACTTGGTGA 2730 0.4777 MSIVETPTADSVFQQRVNDQHRNHSSKRKLDDYGPALDEDDFDGAAVIPAPENLYATGFLPRVKRDEPKAAVNPSFVGAAAEARVSGSQSSSSSRPPPRTESARCESRLQFFVRMMPRGNTVVMHASPHDTVKSIHERIGANTGIPVFEQGLIYRGKQLQWEQSLQECGIQNDANLQLVGRMRSTEHPQAWQVMDKIVNLVCRLCRGEVVHEASKQIKILITNYMNMAPKVDDHSAAAAAAYFNIFVASSGPSMLVTLYVSPFAGNKERADCSVRHFLNSCRHSLSKACHGQCARVVLEFCKLLRRVGFDDPLYMCCRSTLGSMLDVAICDSYGGRYGKGVGGVGGGCILLLDICPFVREIAIRLLRDLDLSIEHPTTSLDQLPSDVRDFSVFLIPLRKGIGDLQTMRGLGMDEKRHKDALLAEEVDYLHHIFIQLLSKMDECLRCMEEFLAGKQQGEGDTGYSAWSQYLSILKELCQISKLYDGAEEEFWKVLMNRRRMVCLLIIQYAKRTDDHHWILDHKCVTNFESRRHLAMMMFPDVKEDYEELHEMLIDRSQLLAESYEYIAQAKPASLHAGLFMEFKNEEATGPGVLREWFFLVCRAIFNPENALFVACPNDRRRFYPNPASKVDPLHLKYFSFSGRVIALALMHKVQVGIIFDRVFFVQLAGKSVTLEDIREADPYLYSSCKQILEMDADFIDSDALGLTFVREVDELGDRKVVELCSGGKSLVVNSTNREKYVDLLIENHFVKSISEQISHFAKGFGDILSNSRLQQFFGSLEPEDLDWMLRGSENIISVEDWKAHTEYNGYKETDCQISWFWEIVGRMSAEQRKVLLFFWTSVKYLPVEGFHGLASRLYIYKSFEPEDRLPSSHTCFYRLCFPAYSSMAVMQDRLGVITQEHIGCSFGTW* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0920 909 MobiDBLite consensus disorder prediction 84 100 - -
Dod03g0920 909 SMART ubq_7 109 181 IPR000626 GO:0005515
Dod03g0920 909 MobiDBLite consensus disorder prediction 82 104 - -
Dod03g0920 909 ProSiteProfiles HECT domain profile. 570 909 IPR000569 GO:0004842
Dod03g0920 909 Gene3D Hect, E3 ligase catalytic domains 552 791 - -
Dod03g0920 909 MobiDBLite consensus disorder prediction 1 43 - -
Dod03g0920 909 CDD HECTc 549 907 IPR000569 GO:0004842
Dod03g0920 909 PRINTS Ubiquitin signature 120 140 IPR019956 -
Dod03g0920 909 PRINTS Ubiquitin signature 162 183 IPR019956 -
Dod03g0920 909 PRINTS Ubiquitin signature 141 161 IPR019956 -
Dod03g0920 909 ProSiteProfiles Ubiquitin domain profile. 109 185 IPR000626 GO:0005515
Dod03g0920 909 SMART hect_3 568 907 IPR000569 GO:0004842
Dod03g0920 909 MobiDBLite consensus disorder prediction 1 19 - -
Dod03g0920 909 MobiDBLite consensus disorder prediction 20 35 - -
Dod03g0920 909 Pfam HECT-domain (ubiquitin-transferase) 599 900 IPR000569 GO:0004842
Dod03g0920 909 Gene3D Hect, E3 ligase catalytic domain 792 907 - -
Dod03g0920 909 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 96 907 - -
Dod03g0920 909 Gene3D Hect, E3 ligase catalytic domain 670 752 - -
Dod03g0920 909 SUPERFAMILY Ubiquitin-like 110 196 IPR029071 -
Dod03g0920 909 SUPERFAMILY Hect, E3 ligase catalytic domain 545 894 IPR035983 GO:0004842
Dod03g0920 909 Pfam Ubiquitin family 112 183 IPR000626 GO:0005515
Dod03g0920 909 Gene3D - 102 205 - -
Dod03g0920 909 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 96 907 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0920 Dod-Chr3 11292276 11298159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0920 109 205 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 4.80e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0920 - - aip:107638691 1333.16