Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0894 ATGAGTCAACTCGGCGTCATACTGCAGGAATCGTTGCGGACGCAGGGGGAGCCACGGACGATCCTGGGTTTGTTGACTGAGCAAATGGACGGCGTCGATGGGGGAGCGCCACGCAGGAGGCGCAGCTTCAAGGAACGGTTAGGATTCATCGGGATGGGTTGTTGTGGTGCCACGTGGCGATTCCGTTCCGAATCCATAACCGTCAGGCACGAAGAACAGGAACGGCAACAACAACCACAACAGCTTCTTCTTGAAACGGATCCGGGCAGAGATCCGAACCGTTTGGGACCCGAGTGCGTGGGTCCGGCTCCTCTGAGTTCGGGTATGAATCTCGCGGCGGCGTTGGCAGCGGAGAGGCAGCTCCGGGGTCCGCAGGAGGCGGCCGGCGGCGGAGGAGGAGGGAGAGTGGGGAGGAGCAGTGCGCCGGGGACGCCGTGGAGGGTGTCGCTGATGAGGCTTTTGGAGGAGACGGACGGTGGTGATGCGGAGGTGGCGACGGCGGCGGCGAAGGTGGAAGAGGAGAAGGGAGGAGGGGCGGTGGCGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGCGCGGCGTTCATCCCATGTGGGCACACTTTTTGCAGGGTGTGTTCCAGGGAGCTGTGGCTCAATCGAGGGTCCTGTCCCCTTTGCAACCGTTCAATCATCGAGATTCTCGACATTTTCTGA 708 0.6158 MSQLGVILQESLRTQGEPRTILGLLTEQMDGVDGGAPRRRRSFKERLGFIGMGCCGATWRFRSESITVRHEEQERQQQPQQLLLETDPGRDPNRLGPECVGPAPLSSGMNLAAALAAERQLRGPQEAAGGGGGGRVGRSSAPGTPWRVSLMRLLEETDGGDAEVATAAAKVEEEKGGGAVAGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSIIEILDIF* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0894 235 PANTHER OS01G0917900 PROTEIN 19 235 - -
Dod03g0894 235 SMART ring_2 187 224 IPR001841 -
Dod03g0894 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 234 IPR013083 -
Dod03g0894 235 SUPERFAMILY RING/U-box 182 232 - -
Dod03g0894 235 Pfam Zinc finger, C3HC4 type (RING finger) 184 230 - -
Dod03g0894 235 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 19 235 - -
Dod03g0894 235 MobiDBLite consensus disorder prediction 124 143 - -
Dod03g0894 235 MobiDBLite consensus disorder prediction 70 93 - -
Dod03g0894 235 ProSiteProfiles Zinc finger RING-type profile. 187 225 IPR001841 -
Dod03g0894 235 CDD RING-HC 187 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0894 Dod-Chr3 11020600 11021916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0894 21 235 C3H Transcription Factor Family AT4G22250 51.802 5.12e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0894 - - aip:107638663 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0894 03 11020600 11021916 Dod03g0894 03 11020600 11021916 ECH
Dod05g2874 05 54653317 54654781 Dod03g0894 03 11020600 11021916 PCT