Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0890 ATGGCCATTCTGCAGCGCCTAGCTAGGACACTTTGCTGCCATTCACTCTCCTCTTTCCGAACCCTAACTTCTCGCTCCTCGCCCTCTCTTCCCCCTTCTCTCTACCACAAACTAGAATCTGCACCTGCTTGGTCCACCGCGCCTCGAGTTTCGCGTGAGGCTCCGGCACCGTATTCCTTGCTTCCGGCTGTGTTAGCTGGCATTTTCGGAGTCGGATTGGTGGAAACGGCGTATGCAGATGCGGATCGTAGCAACGAGGACGTGCAAGAGGTCGCGAAGAAAGAACGCGAGCGGATTGAGGATTTGCTTAGGAAGAAAGGAGTTCGATATGGTTCTTATCCTCGCTTCAATGTTGCTGTTAAAGGCCAAAAGGTCAGTATTAAGTTTCAAGTACCTCCTGCCTGTGAAGTTTCACAACTTATTGCAAATCTTACTGCAAGTCTTGGGCTGAAAGATGAAGGGCATGGCGGTGGCTCAGATATGTTATTGCGTGCTTGGGACAGCACAGTTGCTTGGCAGCTCACCCTTACTCATCCGGCCAAGCAAAAGCATATTCAGAATGATCCACCTTCAACAGATATAAATACACATGATGGAGATCTTTGCATACTCATATTTCGTTCTCTCATTGGCTCAGATAAAGCTGAAATTGAATTTATTAAGCAGGGGAGCTTGAGTCCTGAAGAGCTTGATGCTTTCATCTCTGTTTTGCAATTAGCTGGTAGCAAGATGGGACAAAGAAACACCATGGAAAGAAAGCCAAGGGAAGAGACCGAACAGTTGCCATCAGTAGATAAATCTATTTCTAGTCTTGAGGCCATGGGAGTGAGAATTTATGGACTCAATGAACCCATGGGTATATCAAATGGTGAGATATCGTGGGACAACATTGCTGGTTATGAGCATCAAAAGCGAGCAATAGAAGATACGATACTATTGGCTTTGCATAGTCCTCAAGTATATGATGATATTGCTCGAGGGACTCGTCATAAGTTTGAGTCTAACCGGCCTCGAGCTGTGTTGTTTGAAGGTCCACCAGGTACAGGGAAAACTTCTTGTGCTCGTGTTATTGCTAGTCAAGCGGGTGTCCCTTTGCTCTATGTTCCACTTGAGGCAGTAATGTCTGAATTCTACGGTAAAAGTGAACGCCTTTTGGGAAAAGTGTTTTCACTTGCAAATGATCTTCCTAATGGTGCTATTATATTTCTTGATGAGATTGACTCTTTTGCTGCTGCTCGGGATAATGAAATGCATGAAGCTACAAGGAGAATATTGTCAGTATTGTTGCGACAGATAGATGGCTTTGAGCAGGATAAGAAAGTGGTTGTCATTGCTGCTACGAATAGAAAGGAAGACCTTGATCCTGCATTAATCAGTCGGTTTGATACTATGCTGGCTTTTGGCTTACCTGATCATCATAATCGCCAAAAAATAGCATCCAAATATGCAAAGCACCTGACCGAAGCTGAACTAGATGAACTTGCAAGAGTTACAGAAGATATGTCTGGAAGAGATATCCGAGATGTTTGCCAGCAAGCAGAACGATCATGGGCATCAAAGATTATTCGAGGGCAAGTACCTAAAGATGGTGAACATGCGAGTCTTCCACCTCTGCAAGAATATATAGTGTGCGCAACCAATCGGCAAAAAGCGCTGCTTAGTGTTGGTGCAGGCAGGAATTTGCGGGGTTCTTCCCGCCGCAGGATAAAAAGCGACTGA 1719 0.4526 MAILQRLARTLCCHSLSSFRTLTSRSSPSLPPSLYHKLESAPAWSTAPRVSREAPAPYSLLPAVLAGIFGVGLVETAYADADRSNEDVQEVAKKERERIEDLLRKKGVRYGSYPRFNVAVKGQKVSIKFQVPPACEVSQLIANLTASLGLKDEGHGGGSDMLLRAWDSTVAWQLTLTHPAKQKHIQNDPPSTDINTHDGDLCILIFRSLIGSDKAEIEFIKQGSLSPEELDAFISVLQLAGSKMGQRNTMERKPREETEQLPSVDKSISSLEAMGVRIYGLNEPMGISNGEISWDNIAGYEHQKRAIEDTILLALHSPQVYDDIARGTRHKFESNRPRAVLFEGPPGTGKTSCARVIASQAGVPLLYVPLEAVMSEFYGKSERLLGKVFSLANDLPNGAIIFLDEIDSFAAARDNEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDTMLAFGLPDHHNRQKIASKYAKHLTEAELDELARVTEDMSGRDIRDVCQQAERSWASKIIRGQVPKDGEHASLPPLQEYIVCATNRQKALLSVGAGRNLRGSSRRRIKSD* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0890 572 Gene3D - 291 469 IPR027417 -
Dod03g0890 572 Coils Coil 85 105 - -
Dod03g0890 572 CDD AAA 333 469 - -
Dod03g0890 572 SMART AAA_5 336 471 IPR003593 -
Dod03g0890 572 Gene3D - 470 534 - -
Dod03g0890 572 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 35 556 - -
Dod03g0890 572 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 35 556 - -
Dod03g0890 572 ProSitePatterns AAA-protein family signature. 441 460 IPR003960 GO:0005524|GO:0016887
Dod03g0890 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 517 IPR027417 -
Dod03g0890 572 Pfam ATPase family associated with various cellular activities (AAA) 340 468 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0890 Dod-Chr3 10954088 10963037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0890 291 513 Calmodulin-binding Proteins AT3G56690 33.476 1.75e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0890 - - gmx:100803362 875.544