Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0888 ATGCAAACACAAACTGTCTCTTCCTTCCCATGCCCTTCCACCAATAATCACGACCAAAACCGCAATTACACTTCTTTCATGCTTGAGAGTAACCACAACAACAACACTGGCTTAGGGTGTTATTTCATGGAGAGCGACCACAACAACAACAACAACAATGGAATCTCCTCCTCCTCCTCTTCTTCTTCTGCTGCCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCTTACGTCAATTGCCAAAAGGTTGGAGCACCGCCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCATCTGCAGTGTCAATGGCTGGTGACACAGCAGGATCAGCTTGCATAGGTGAAGATCCGGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGCTCACTAAGTACGAGCAAGAGCTCTCCAAACCCTTAAAGGAAGCCATGCTCTTCCTTCAAGGGATTGAGTGCCAGTTCAAGAATCTCACAATTTCTTCCTCCGACTTCGCAGCTGGTAATGAGGCCACTGATAGGAATGGATCATCTGAAGAAGATGTTGATCTACACAACATCATAGATCCTAGTGCAGAGGACAGGGAATTAAAGGGCCAGCTTTTGCGCAAGTACAGCGGCTACTTGGGCAGTCTGAAGCAGGAGTTCATGAAGAAGAGGAAAAAAGGAAAGCTGCCCAAAGAGGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCTGAATCACAGAAGCTGGCTCTAGCAGAATCCACTGGTCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAGAGAAAACGTCACTGGAAGCCTTCGGAGGACATGCAGTTTGTGATGGTGGATCCAAGCCATCCACACTACTACATGGACAATGTTCTGAGCAATCCATTTCCCATGGATCTCTCCAACACAATGCTCTAG 960 0.4698 MQTQTVSSFPCPSTNNHDQNRNYTSFMLESNHNNNTGLGCYFMESDHNNNNNNGISSSSSSSSAAKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAVSMAGDTAGSACIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQGIECQFKNLTISSSDFAAGNEATDRNGSSEEDVDLHNIIDPSAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVMVDPSHPHYYMDNVLSNPFPMDLSNTML* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0888 319 SMART ELK_2 201 222 IPR005539 GO:0003677
Dod03g0888 319 SMART KNOX2_2 114 165 IPR005541 GO:0003677|GO:0005634
Dod03g0888 319 ProSitePatterns 'Homeobox' domain signature. 259 282 IPR017970 GO:0000981|GO:0006355
Dod03g0888 319 ProSiteProfiles 'Homeobox' domain profile. 221 284 IPR001356 GO:0003677
Dod03g0888 319 Pfam KNOX2 domain 117 164 IPR005541 GO:0003677|GO:0005634
Dod03g0888 319 CDD homeodomain 233 285 IPR001356 GO:0003677
Dod03g0888 319 SMART HOX_1 223 288 IPR001356 GO:0003677
Dod03g0888 319 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 25 308 - -
Dod03g0888 319 Pfam Homeobox KN domain 241 280 IPR008422 GO:0003677|GO:0006355
Dod03g0888 319 SMART KNOX1_2 63 107 IPR005540 GO:0003677|GO:0005634
Dod03g0888 319 ProSiteProfiles ELK domain profile. 201 221 IPR005539 GO:0003677
Dod03g0888 319 SUPERFAMILY Homeodomain-like 223 299 IPR009057 -
Dod03g0888 319 Pfam KNOX1 domain 66 103 IPR005540 GO:0003677|GO:0005634
Dod03g0888 319 Pfam ELK domain 201 222 IPR005539 GO:0003677
Dod03g0888 319 Gene3D - 226 288 - -
Dod03g0888 319 PANTHER - 25 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0888 Dod-Chr3 10915992 10921667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0888 42 319 Homeobox Transcription Factor Family AT1G62360 77.003 2.83e-137 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dod03g0888 KNOX2 3.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0888 - - gmx:547796 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2869 05 54589329 54594217 Dod03g0888 03 10915992 10921667 PCT