Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0858 ATGAAGAAGGGTGAAACGGAGGAGAGCTGTCTAAAAGGTTCTCCTACTCCAACTATGTCATCATCCTCTTCTTCTCTTATTAGCAGTGTCGTTGATAATAATTATAGGCATAGCCCTTCATCAACAGCCATTCGCCAAGTTCTTGTTTCTCATCATGAAAAGCTTCCAGAGATAAGCCTGAGATCACCGATGGTTAGGCCTTATGTTCGATCAAAAATGCCTCGCCTTCGTTGGACACCAGATCTCCACCGTTGCTTCGTGCATGCAGTTCAAAGGCTTGGAGGAGAAGACAGGGCCACACCAAAGTTGGTGTTGCAATTAATGAATGTTAAGGGGCTTACCATATCTCATGTTAAAAGCCACCTTCAGATGTACAGGAGCATGAAGCACGAGCAGATGAGTCAAGCAGGAAAGAAGAATGATGTGGAACCAGATTTCATAGCTTCCACATTCTCCTCAACTTTTGATGAACCAAGCTACGGTCAACGGAATCTTCTGCAAGGGAGCTGTGGAACTCATTACACCGAAGAGCTTGCTCGCACCAAACTCCAAGCTCAATGGAATCATAACGAGGAGGAGTCTCACAATAATGCAAACCAAAGGAGTGAGGAAACGATTATAGTTTGTAATGGCGATGAACAGAAGACACACGCCTACATCATCTTTCAGGATATTCTCAGAAGCCAGACTGTCCAAGAGAACAAAAATGGGTCTGAAAAGGGGTCACTAGGGGCAGCTGCTGATTACGAAAGCGACCATCCAAGATTCGAAGGCACAACCGCGAGAGGAAAGAGAGTGGGTGAAGACGACATGCTGTCCCTGTCACTGAGCTCAAGAGGTTTACATCCATTCTTGAAACAGAGCCACCACAGTCCTGATGTGAATGATGTCTCTCTTGAGCTCACGCTCTCTTAA 915 0.4568 MKKGETEESCLKGSPTPTMSSSSSSLISSVVDNNYRHSPSSTAIRQVLVSHHEKLPEISLRSPMVRPYVRSKMPRLRWTPDLHRCFVHAVQRLGGEDRATPKLVLQLMNVKGLTISHVKSHLQMYRSMKHEQMSQAGKKNDVEPDFIASTFSSTFDEPSYGQRNLLQGSCGTHYTEELARTKLQAQWNHNEEESHNNANQRSEETIIVCNGDEQKTHAYIIFQDILRSQTVQENKNGSEKGSLGAAADYESDHPRFEGTTARGKRVGEDDMLSLSLSSRGLHPFLKQSHHSPDVNDVSLELTLS* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0858 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 130 IPR017930 -
Dod03g0858 304 MobiDBLite consensus disorder prediction 250 268 - -
Dod03g0858 304 MobiDBLite consensus disorder prediction 1 25 - -
Dod03g0858 304 Gene3D - 73 131 - -
Dod03g0858 304 Pfam Myb-like DNA-binding domain 76 126 IPR001005 -
Dod03g0858 304 MobiDBLite consensus disorder prediction 11 25 - -
Dod03g0858 304 MobiDBLite consensus disorder prediction 285 304 - -
Dod03g0858 304 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 26 277 - -
Dod03g0858 304 SUPERFAMILY Homeodomain-like 72 128 IPR009057 -
Dod03g0858 304 MobiDBLite consensus disorder prediction 233 268 - -
Dod03g0858 304 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 74 128 IPR006447 GO:0003677
Dod03g0858 304 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 26 277 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0858 Dod-Chr3 10623158 10627970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0858 65 137 G2-like Transcription Factor Family AT2G42660 75.342 1.17e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dod03g0858 Myb_DNA-binding 1.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0858 - - pvu:PHAVU_006G149000g 295.819