Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0842 ATGGGGTGTAATGGTAGCAAAGACAAAAGAACCAGTGGTTATGGATCAAACCCAAGTGTTGTTGAAAGCCATCAAAGTAATCACCCCAGTTTTGAGACTCAGAAATCAGAACAAAAGAACAACCAGCATCAGGCACAGGCACAGGTGCAAGTCACCACCCCACCAAAGCCTTCTTCACAGAATTCAATTGCAGGACCAGTAGTTCAGAAGCCTGAAACAACCATTCTGGGTAAACCCTTTGAGGACATAAAGAAGCACTACACTCTTGGGAAGGAATTGGGTAGAGGGCAATTTGGAGTCACCTATCTGTGCACTGAGAACTCAAGTGGCCACACCTATGCATGCAAGTCCATCTTGAAGAGGAAGCTTGTGTCCAAGGCTGATAGAGAGGACATAAAGAGGGAGATTCAGATCATGCAGCATTTGTCTGGCCAACCAAACATTGTGGAGTTCAAGGGTGCCTATGAGGACAGGTACTCAGTGCACCTTGTGATGGAGCTGTGTGCTGGTGGGGAGCTCTTTGATAGAATCATTGCTCAGGGTCACTATTCAGAGAGTGCCGCGGCATCAATGTGCCGTGCCATTGTCAATGTTGTGCACATTTGCCACTTTATGGGTGTGATGCACCGTGATCTCAAGCCTGAGAATTTCTTGCTTTCTGGCAAGGATGAGGGGGCAGCTCTCAAGGCAACTGATTTTGGATTGTCTGTCTTCATAGAAGAAGGCAAGGTTTACCAAGATATAGTAGGCAGTGCTTACTATGTTGCTCCTGAGGTATTGCGTCGTAATTACGGCAGGCAAATTGATATTTGGAGCGCAGGCATCATGTTGTATATTCTCCTGAGTGGTGTGCCTCCATTTTGGGCTGAAACTGAAAAGGGAATATTTAATGCCATATTGGAAGGTGAAATTGACTTTGAAAGTCAACCATGGCCATCAATATCAAGTAGTGCCAAAGATCTAGTCAGGAAGATGTTAACACAGGATCCTAAGAAGCGGATTACTTCTGCTCAAGTCCTTGAACATCCATGGATCAGAGAAGGTGGAGAGGCATCTGATAAACCCATTGATAGTGCTGTTCTGTCTAGAATGAAACAGTTCAGGGCAATGAATAAGCTAAAAAAGCTCGCATTGAAGGTTATTGCTGAAAATTTGTCTGAAGAAGAGATTAAAGGTCTCAAAGCAATGTTCGCAAATATGGACACTGACCACAGCGGCACTATCACCTATGAGGAACTGAAGACAGGTTTGGCCCGAATTGGATCACGGCTGTCCGAGGCCGAAGTGAAGCAACTCATGGAAGCTGCTGATGTTGATGGCAATGGATCAATTGACTACATTGAGTTCATCTCAGCTACAATGCATAGGCACAGGCTTGATCGAGATGAACAACTCTACAAAGCATTCCAGTACTTTGATAAGGATAACAGCGGCTACACTACTAGAGATGAATTGGAATCTGCAATGACTCAGCATGGCATGGGCGATGAAGCCACAATAAAGGAAATAATTTCTGAGGTGGATACTGATAATGATGGGAGAATAAACTACGAGGAATTCTGTGCAATGATGAGAAGTGGAACACAACACCAGGCACAACTACCATACATACACTGA 1617 0.4465 MGCNGSKDKRTSGYGSNPSVVESHQSNHPSFETQKSEQKNNQHQAQAQVQVTTPPKPSSQNSIAGPVVQKPETTILGKPFEDIKKHYTLGKELGRGQFGVTYLCTENSSGHTYACKSILKRKLVSKADREDIKREIQIMQHLSGQPNIVEFKGAYEDRYSVHLVMELCAGGELFDRIIAQGHYSESAAASMCRAIVNVVHICHFMGVMHRDLKPENFLLSGKDEGAALKATDFGLSVFIEEGKVYQDIVGSAYYVAPEVLRRNYGRQIDIWSAGIMLYILLSGVPPFWAETEKGIFNAILEGEIDFESQPWPSISSSAKDLVRKMLTQDPKKRITSAQVLEHPWIREGGEASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKAMFANMDTDHSGTITYEELKTGLARIGSRLSEAEVKQLMEAADVDGNGSIDYIEFISATMHRHRLDRDEQLYKAFQYFDKDNSGYTTRDELESAMTQHGMGDEATIKEIISEVDTDNDGRINYEEFCAMMRSGTQHQAQLPYIH* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0842 538 SMART efh_1 428 456 IPR002048 GO:0005509
Dod03g0842 538 SMART efh_1 499 527 IPR002048 GO:0005509
Dod03g0842 538 SMART efh_1 392 420 IPR002048 GO:0005509
Dod03g0842 538 SMART efh_1 464 492 IPR002048 GO:0005509
Dod03g0842 538 SUPERFAMILY Protein kinase-like (PK-like) 61 366 IPR011009 -
Dod03g0842 538 ProSiteProfiles EF-hand calcium-binding domain profile. 460 494 IPR002048 GO:0005509
Dod03g0842 538 CDD STKc_CAMK 86 344 - -
Dod03g0842 538 ProSiteProfiles EF-hand calcium-binding domain profile. 388 423 IPR002048 GO:0005509
Dod03g0842 538 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Dod03g0842 538 ProSiteProfiles Protein kinase domain profile. 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g0842 538 Pfam Protein kinase domain 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g0842 538 MobiDBLite consensus disorder prediction 1 70 - -
Dod03g0842 538 Gene3D Phosphorylase Kinase; domain 1 89 172 - -
Dod03g0842 538 ProSitePatterns Protein kinases ATP-binding region signature. 93 120 IPR017441 GO:0005524
Dod03g0842 538 PANTHER SERINE/THREONINE-PROTEIN KINASE 44 529 - -
Dod03g0842 538 ProSitePatterns EF-hand calcium-binding domain. 508 520 IPR018247 -
Dod03g0842 538 Gene3D Transferase(Phosphotransferase) domain 1 173 354 - -
Dod03g0842 538 ProSitePatterns EF-hand calcium-binding domain. 437 449 IPR018247 -
Dod03g0842 538 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 44 529 - -
Dod03g0842 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Dod03g0842 538 ProSiteProfiles EF-hand calcium-binding domain profile. 495 530 IPR002048 GO:0005509
Dod03g0842 538 SMART serkin_6 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g0842 538 SUPERFAMILY EF-hand 384 524 IPR011992 -
Dod03g0842 538 ProSiteProfiles EF-hand calcium-binding domain profile. 424 459 IPR002048 GO:0005509
Dod03g0842 538 Pfam EF-hand domain pair 462 525 IPR002048 GO:0005509
Dod03g0842 538 Pfam EF-hand domain pair 393 453 IPR002048 GO:0005509
Dod03g0842 538 MobiDBLite consensus disorder prediction 9 68 - -
Dod03g0842 538 Gene3D - 355 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0842 Dod-Chr3 10393755 10398240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0842 1 538 EF-hand Containing Proteins AT4G04720 74.815 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dod03g0842 Pkinase 3.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0842 K13412 - gmx:100816859 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0842 03 10393755 10398240 Dod03g0842 03 10393755 10398240 ECH