Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0834 ATGATAGCCCTGGATCACACCATATTTGTTGGTGACTTGGCTGCGGATGTTACTGATTACCTCCTTCAGGAGACATTTAGGCCTCGTTATAACTCGGTGAAGGGGGCAAAAGTTGTGATTGATAGGCTCACTGGCCGGAGTAAGGGTTATGGTTTTGTGAGGTTTGGGGATGAAAGTGAGCAGGTGAGGGCCATGACTGAGATGCAAGGGTTTCTTTGTTCTACTAGACCCATGAGGATTGGACCAGCCTCTAATAAAACCTCCAGCACTCAGCCAAAAGCATCATATCAGAATTCTCCAGGCACACACAACGAGAATGATCCGAATAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTCACTGATGATCATCTGAGACAAGTTTTTGGTCAGTACGGAGAGTTAGTTCATGTGAAGATTCCAGCAGGCAAGCGATGTGGGTTTGTCCAATTTGCTGACAGGAGCTGTGCAGAAGAGGCACTAAGGATTTTGAATGGAACGCTGCTGGGTGGACAAAATGTTAGGCTTTCCTGGGGCCGCAGTCCTTCAAACAAACAGGCTCAGTCAGATCCAAACCAGTGGAATGGTGGTAGTGGATATTATGGATATGCTCAAGGATACGAAAACTATGGTTATGCTGCTCCTGCAGGACAGGACCCCAACATGTATGGCAATTATCCGGGGTATCCAAACTACCAGCCACCGCAGCAACAGCAGCAAATAGGATATAGTTGA 741 0.4629 MIALDHTIFVGDLAADVTDYLLQETFRPRYNSVKGAKVVIDRLTGRSKGYGFVRFGDESEQVRAMTEMQGFLCSTRPMRIGPASNKTSSTQPKASYQNSPGTHNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRILNGTLLGGQNVRLSWGRSPSNKQAQSDPNQWNGGSGYYGYAQGYENYGYAAPAGQDPNMYGNYPGYPNYQPPQQQQQIGYS* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0834 246 Gene3D - 88 217 IPR012677 -
Dod03g0834 246 MobiDBLite consensus disorder prediction 225 246 - -
Dod03g0834 246 Gene3D - 5 81 IPR012677 -
Dod03g0834 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 85 IPR000504 GO:0003723
Dod03g0834 246 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 5 243 - -
Dod03g0834 246 SUPERFAMILY RNA-binding domain, RBD 6 99 IPR035979 GO:0003676
Dod03g0834 246 SUPERFAMILY RNA-binding domain, RBD 96 208 IPR035979 GO:0003676
Dod03g0834 246 CDD RRM2_SECp43_like 5 84 - -
Dod03g0834 246 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 5 243 - -
Dod03g0834 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 72 IPR000504 GO:0003723
Dod03g0834 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 176 IPR000504 GO:0003723
Dod03g0834 246 CDD RRM3_NGR1_NAM8_like 110 181 - -
Dod03g0834 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 183 IPR000504 GO:0003723
Dod03g0834 246 MobiDBLite consensus disorder prediction 81 111 - -
Dod03g0834 246 MobiDBLite consensus disorder prediction 232 246 - -
Dod03g0834 246 SMART rrm1_1 112 179 IPR000504 GO:0003723
Dod03g0834 246 SMART rrm1_1 7 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0834 Dod-Chr3 10303944 10306847 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0834 8 190 Eukaryotic Initiation Factors Gene Family AT1G22760 29.255 1.13e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0834 - - aprc:113864230 400.979