Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0832 ATGATGCAGCCAGGACCTGGAATGGTTCCACCCAGCATGGGCCAGCAGCCTCCGCAGCAACAGTACCCGCCTCAGCAGCAGCCGCCCTACATGATGATGCCGCCTCAGCCCCAGGCTCCGCCACCGATGTGGGCCCCTTCCGCACAGGCCCCGCCGCAGCAGGTTGCTCCGCCGCAACAACCTTCTCAGCCCGGCAGCGCCGACGAGGTCCGGACCCTCTGGATCGGCGACTTGCAGTACTGGATGGACGAGAACTACATCTACACCTGCTTCGCTCATACTGGCGAGGTGACCTCTGTTAAGGTTATTCGGAATAAGCAAACTGGTCAGTCTGAGGGCTATGGTTTTATCGAGTTCAGCAGTCGTGCCGGTGCTGAGAGAGTGCTCCAGGCATATAATGGAACAATTATGCCGAATGGTGGGCAGAGCTTCAGATTGAACTGGGCTACTTTTAGTGCTGGCGAGAGGCGCCACGATGATAGCCCTGATCACACCATATTTGTTGGTGACTTGGCTGCGGATGTTACTGATTACCTCCTTCAGGAGACATTTAGGGCTCGTTATAACTCGGTGAAGGGAGCAAAAGTTGTGATTGATAGGCTCACCGGCCGGAGTAAGGGTTATGGTTTTGTGAGGTTTGGGGATGAAAGTGAGCAGGTGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCAACTAGACCCATGAGGATTGGACCAGCCTCTAATAAAACCCCCAGCACTCAGCCAAAAGCATCATATCAGAATTCTCAAGGCGCACAGAACGAGAATGACCCAAATAATACAACTATTTTTGTTGGCAATTTGGATCCCAACGTCACTGATGATCATCTGAGACAAGTTTTTGGTCAGTACGGAGAGTTAGTTCATGTGAAGATTCCAGCTGGCAAGCGATGTGGGTTTGTCCAATTTGCTGACAGGAGCTGTGCAGAAGAGGCATTAAGGATTTTGAATGGAACCCTGCTGGGTGGACAAAATGTCAGGCTTTCCTGGGGCCGCAGTCCTTCAAACAAACAGGCTCAGTCAGATCAAAACCAGTGGAATGGTGGTGGTGGATATTATGGATATGCTCAAGGTTACGAAAATTATGGTTATGCTGCTGCAGGACAGGACCCCAACATGTATGGCAGTTATCCAGGGTATCCGAACTACCAACCACCGCGGCAACAGCAGCAAATAGGATATAGTTGA 1212 0.5149 MMQPGPGMVPPSMGQQPPQQQYPPQQQPPYMMMPPQPQAPPPMWAPSAQAPPQQVAPPQQPSQPGSADEVRTLWIGDLQYWMDENYIYTCFAHTGEVTSVKVIRNKQTGQSEGYGFIEFSSRAGAERVLQAYNGTIMPNGGQSFRLNWATFSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKTPSTQPKASYQNSQGAQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRILNGTLLGGQNVRLSWGRSPSNKQAQSDQNQWNGGGGYYGYAQGYENYGYAAAGQDPNMYGSYPGYPNYQPPRQQQQIGYS* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0832 403 MobiDBLite consensus disorder prediction 235 272 - -
Dod03g0832 403 CDD RRM2_SECp43_like 163 242 - -
Dod03g0832 403 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 20 400 - -
Dod03g0832 403 MobiDBLite consensus disorder prediction 238 272 - -
Dod03g0832 403 CDD RRM3_NGR1_NAM8_like 268 339 - -
Dod03g0832 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 243 IPR000504 GO:0003723
Dod03g0832 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 151 IPR000504 GO:0003723
Dod03g0832 403 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 20 400 - -
Dod03g0832 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 334 IPR000504 GO:0003723
Dod03g0832 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 138 IPR000504 GO:0003723
Dod03g0832 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 229 IPR000504 GO:0003723
Dod03g0832 403 Gene3D - 250 377 IPR012677 -
Dod03g0832 403 MobiDBLite consensus disorder prediction 1 68 - -
Dod03g0832 403 SUPERFAMILY RNA-binding domain, RBD 254 366 IPR035979 GO:0003676
Dod03g0832 403 MobiDBLite consensus disorder prediction 383 403 - -
Dod03g0832 403 CDD RRM1_SECp43_like 72 152 - -
Dod03g0832 403 Gene3D - 10 154 IPR012677 -
Dod03g0832 403 SMART rrm1_1 72 147 IPR000504 GO:0003723
Dod03g0832 403 SMART rrm1_1 270 337 IPR000504 GO:0003723
Dod03g0832 403 SMART rrm1_1 165 239 IPR000504 GO:0003723
Dod03g0832 403 MobiDBLite consensus disorder prediction 1 59 - -
Dod03g0832 403 Gene3D - 155 249 IPR012677 -
Dod03g0832 403 SUPERFAMILY RNA-binding domain, RBD 32 152 IPR035979 GO:0003676
Dod03g0832 403 SUPERFAMILY RNA-binding domain, RBD 158 257 IPR035979 GO:0003676
Dod03g0832 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 341 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0832 Dod-Chr3 10296568 10300345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0832 70 348 Eukaryotic Initiation Factors Gene Family AT2G23350 28.070 1.01e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0832 - - aprc:113864230 610.142