Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0808 ATGGATCAAAACCAAAATGGGCAACATCAACATGCAACAAGAGGGACTAGCACTCCCCCAGCAACACAAACTCATCATGGCATGAACCAATATCAACCCAACCACATGATGATGGAAACAAATCAAGTAGCTGGTCCTTCTTCTGCCCCTTCACCTTACTTAATAGACCAACAACAACATGCTCACCACTACATGAACCAGCTACAACAACAACAAGAACTGCAGCAAAAGCTCAACACCTTCTGGGAAAACCACTACAGAGAAATTGAGGAAACAACTGATTTCAGAAACCACTCCTTGCCTCTGGCAAGAATCAAGAAGATCATGAAGGCTGATGAGGAAGTGAAGATGATATCAGCAGAGGCACCTGTGATCTTTGCCAAGGCTTGTGAGATGTTCATAATGGAGCTGACAATGAGGGCATGGGCCAATGCAGAAGAGAACAAGAGGAGGACACTTCAGAAGAATGACATTGCAGCTGCAGTCACAAAGACTGATGTGTTTGATTTCCTGGTTGATGTTGTCCCTAGGGATGAGACCATGGACCTTGATTTATATTCAGGCATAAGAAGAGGTGGTGCCAATATTAATGTTCCTTATTATTATGGTATGCCACCTCAGCATGTTGTGGATCCACCATATCATCCATATGGCCCTCCTCCTCCTCCTCCTCCAAGAGTGGTTATGGCAGGAGGGGCTAGCTGTTGTTCCTGA 714 0.451 MDQNQNGQHQHATRGTSTPPATQTHHGMNQYQPNHMMMETNQVAGPSSAPSPYLIDQQQHAHHYMNQLQQQQELQQKLNTFWENHYREIEETTDFRNHSLPLARIKKIMKADEEVKMISAEAPVIFAKACEMFIMELTMRAWANAEENKRRTLQKNDIAAAVTKTDVFDFLVDVVPRDETMDLDLYSGIRRGGANINVPYYYGMPPQHVVDPPYHPYGPPPPPPPRVVMAGGASCCS* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0808 237 Gene3D Histone, subunit A 61 177 IPR009072 GO:0046982
Dod03g0808 237 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3-RELATED 23 209 - -
Dod03g0808 237 Pfam Core histone H2A/H2B/H3/H4 59 162 IPR007125 GO:0003677
Dod03g0808 237 SUPERFAMILY Histone-fold 57 171 IPR009072 GO:0046982
Dod03g0808 237 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 23 209 - -
Dod03g0808 237 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0808 Dod-Chr3 10095536 10097802 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0808 1 233 CCAAT-HAP5 Transcription Factor Family AT1G08970 51.452 2.79e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dod03g0808 Histone 1e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0808 K08066 - jre:109010478 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0808 03 10095536 10097802 Dod03g0808 03 10095536 10097802 ECH