Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0798 ATGGGTATTTCGTGGAGCGGTAGGAGAAGAAACAACTACTTTCAAAACCCACCACCACCACCACCACTTCCACCACCCCCTTACCACTACTCCACACAATCTCAGCCTCCACCACCACCGCAAGGTTACTTTTTTCCCACCACAACCACCGCCCCTTACACCCCTCCAGCACCACCGCCACTACCTCAGACCCATTCCTTCTATTACTCCTCCAATGGCTACACCAATTCCGTAGTGGGGGGTCGCCTTCGCTACCAACCTTTCTATCCCAACCACCCTCCTCTTCCTCTTCCAGCTCCTCTTCCTCCTTCTCTCTCATCCCCACCTCCCTATGTTGACCACCAAACTGCTAAGAAGATCAGGAACTACGTCAACGTCCACAAGGACACCTTGAAGCTCGAGATTGATGAGCACAACCCCGATCACCACCTCCTTTCCTTCGTTTTTGATGCTGTCTATGATGGCAGCATTACGATCTACTACTTTGCCAAGGAAGAAGAAAAATGTAGGTTTGTTCCCCTATATCCTGATGCATTTGGGCCACTAAGAATCCCTTTTCAGAAAGGAGTTGGGCAGAAGTTTAGTCAACCTTCAGGAACAGGCATTGACCTTGGCTTCTTTGCATTGGATGATCTTTCAAAGCCCTCACCTGGAGAAGATGTCTTTCCTCTCATTATATGTGCTGAAACATGTTTGACAACTCCCTCATCAGATGAAACCCCTGATGATTCCATGCTAAATGCATCTCCTCACATGCAAATAACTCAAGGTGTCTTAGAGAAAAGCAACAGTGATGGTCCTTTCCAGATAAAAGTAGTTAGACAGATTTTGTGGATTGGTGGTGTCCGTTATGAGTTGAGAGAGTTATATGGAATAGGAAGCTCAGAGGCAACAGATTTTGATGACAATGATCCTGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACTGCTGTCTTACCTTGTCGACATATGTGTATGTGCAGCGAGTGTGCAAAAGCTTTGCGACTCCAGTCCAATAAATGTCCTATATGCCGTCAGTCTATTGATGAACTTATTGAGATCAAGATAAACAATGCCGGCCAATGA 1095 0.4639 MGISWSGRRRNNYFQNPPPPPPLPPPPYHYSTQSQPPPPPQGYFFPTTTTAPYTPPAPPPLPQTHSFYYSSNGYTNSVVGGRLRYQPFYPNHPPLPLPAPLPPSLSSPPPYVDHQTAKKIRNYVNVHKDTLKLEIDEHNPDHHLLSFVFDAVYDGSITIYYFAKEEEKCRFVPLYPDAFGPLRIPFQKGVGQKFSQPSGTGIDLGFFALDDLSKPSPGEDVFPLIICAETCLTTPSSDETPDDSMLNASPHMQITQGVLEKSNSDGPFQIKVVRQILWIGGVRYELRELYGIGSSEATDFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIDELIEIKINNAGQ* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0798 364 Pfam Zinc finger, C3HC4 type (RING finger) 307 353 - -
Dod03g0798 364 SUPERFAMILY RING/U-box 303 354 - -
Dod03g0798 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 358 IPR013083 -
Dod03g0798 364 MobiDBLite consensus disorder prediction 1 57 - -
Dod03g0798 364 MobiDBLite consensus disorder prediction 14 57 - -
Dod03g0798 364 SMART ring_2 309 347 IPR001841 -
Dod03g0798 364 PANTHER MAHOGUNIN 1 362 IPR045194 GO:0061630
Dod03g0798 364 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 362 - -
Dod03g0798 364 ProSiteProfiles Zinc finger RING-type profile. 309 348 IPR001841 -
Dod03g0798 364 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 308 348 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0798 Dod-Chr3 9941364 9946141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0798 111 364 C3H Transcription Factor Family AT3G06140 61.569 8.87e-109 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0798 - - gsj:114373285 510.76