Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0750 ATGACGAAACCGAAGATAGAACTAAAAAAGATAGACAACAATGCAGCGAGGCAGGTTACCTTTAGTAAGAGGAGGAGAGGGCTCTTCAAGAAGGCTCAGGAGCTTTCAACTCTTTGTGATACTGAGATTGCCATCACTGTCTTTTCCGATCATGGCAAGCTCTTCGAATACCCTAACTCAAGGGTGCAGCAGTTACTTGAAAAGTACGATCTACATTCAAGCATTTGCAGATTACAACCACCACCTGAAGAAATGCAGCTTGAGAGGGACACCTACAGCATGATGCGCGAGGAACTTGCAGATAAGACTGTTGAACTGAGGCGATTGAATGGAGAGGAGCTGCAAGGATTGAAAATTCATGAATTAAAGAAACTAGAGAAACTAATAGGAAAAGGTTTGAGCCGTGTTTCAAAAGCAAAGGATGAAAGTCTTGGAAAGGATATCAGGGAGCTCAAGAAAAAGGGAGCTAAACTAGCTGCAGACAACCGACGACTGGAACAGACACAAAGTCTTGCAAACGATCAAGGGCAGTCATCAAAGTCAACCATGATTCGCAGCGGTCCATCAAACATTGCTCATCAAGACTCGGATAATTATGATGCTTCTCTCAACTTGGGGTTGGCTATGTTTAAATGA 636 0.4324 MTKPKIELKKIDNNAARQVTFSKRRRGLFKKAQELSTLCDTEIAITVFSDHGKLFEYPNSRVQQLLEKYDLHSSICRLQPPPEEMQLERDTYSMMREELADKTVELRRLNGEELQGLKIHELKKLEKLIGKGLSRVSKAKDESLGKDIRELKKKGAKLAADNRRLEQTQSLANDQGQSSKSTMIRSGPSNIAHQDSDNYDASLNLGLAMFK* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0750 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod03g0750 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod03g0750 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod03g0750 211 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Dod03g0750 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod03g0750 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod03g0750 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 208 - -
Dod03g0750 211 Coils Coil 92 112 - -
Dod03g0750 211 ProSiteProfiles K-box domain profile. 85 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod03g0750 211 MobiDBLite consensus disorder prediction 164 198 - -
Dod03g0750 211 Coils Coil 148 168 - -
Dod03g0750 211 Pfam K-box region 89 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod03g0750 211 PANTHER - 1 208 - -
Dod03g0750 211 SUPERFAMILY SRF-like 3 90 IPR036879 GO:0003677|GO:0046983
Dod03g0750 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0750 Dod-Chr3 9294640 9305076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0750 1 211 MADS-box Gene Family AT4G24540 45.000 1.59e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod03g0750 K-box 3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0750 - - ahf:112786765 210.69