Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0741 ATGGTCCATATCCCCATTCGCATCATCGGTCACAATAGTCAAAACAAAACAAACACGGCTCACACGCAACAGCAGACAAAACCCTCCCACCGCAACCACCAACCTCCACCACCACCTCCGTATCTTACCTTCTCCGCAAACCAACCAACCAACCAACCAAACATCCATCCCTCCCAACCACTCCTCTCAATTAGGGTTCCAATGGAACCCCTCCCTTCACCACCTCCACCCCCACCCCCTCCCCCTCCCCGACAACAACAACAACAACATCCTCTTCCACCCAACAACAACATCGTCATGGACGTCACGACTCCCGACGACCCTTCCTCCTCACTCTGGGACCTCTCTTACCTCCTCGACTTCAACCTCGACGAGCAAATGCCCTTCCCGGTCGTTGACCTCCCCACCACTCCTTCCCCTCCTCCTCAGCCTTCGGATTTAGATCCTCCCCTTCATCCTCAGCCACATGATGTTCCTACTCTTCCCATCAACGACACCAGGGTCAGGAAGCGGGACCCGAGGCTCACGTGCTCCAACTTTATCGCGGGTCGGGTCCCGTGCGCCTGCCCCGAGCTCGACGCAAAGCTCGAGGAGGAAGGGCTCCCCGGCAAGAAGCGCGTGAGGTCCTCGGCGCGTGGCGGCTCCCCTGCGCGTTGCCAGGTCCCTGGCTGCGAGGCTGATATCACCGAGCTCAAGGGTTACCACCGCAGGCATAGGGTTTGTCTGCGATGTGCTAATGCTACGACCGTTCTCCTCCATGGTGAGCCCAAGAGATACTGTCAACAGTGTGGCAAGTTTCACGTATTGTCGGATTTTGATGAAGGTAAACGCAGCTGCAGAAGAAAGTTAGAGCGACATAATAACAGAAGGCGAAGAAAGCCTTCAGATTCAAGAGCTCCAGCTGATCATGAACCTCAACCTGTTACTCAAAATGAGGATTCCAATAATGATGGAGAAGCTGGAAAAGATGGTTCAAATTTGAGTAGTGAAATAAATGAACAAGAAGTGTCACTGGATCATGAAGATGAACCAGTTGCTATTCTGAGTGCAGCTCCTGAGATGCAGAATATTGCTAATGATAGCGTTGTATCTTTTGTTGCTTCTGGTGAAACACAAGTGAATAGTGGAAAAGATGTTTCCAATATTTCTAATTCACCTTCATATTGTGAGAATAAGAGTGCTTATTCATCTTTGTGCCAAACAGGTCGGATCTCTTTTAAGCTTTACGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGCCACCAAATATTCCAATGGTTGGCAAGTATGCCGTTAGAGCTTGAGGGATATATCCGTCCAGGGTGTACGATCCTAACAATTTTTATTGCAATGCCAAATATTATGTGGATAAATTTACGGGAAGACCCTATGCATTATGTCTGTGATCTTGTTGCTCCCAGAAGGATGCTATCTGGAAGAGGCACTGCTCTAGTTCATCTTAATGACATGATCTTCCATGTTATGAAAGATGGAACTTCTGTGTCAAAAGTTGAGGTAAACATGCAGGCACCGAGGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGTAAACCTATGGAGTTACTTGCTTGTGGAAGTAACTTGCTACAGTGCAAGTTTCGGTTTCTTGTATCTTTTTCTGGAAAGTATCTGAAGTGTGAGTATTGTGTTCCATCTCCACATGACTGGACTGGAGACAGTATTTCTTGTGCTTTTGACAGTCAGTTATACAAGATATGTGTCCCTCATACAGAGGAAAACCTCTTCGGGCCTGCATTTATTGAGGTTGAGAATGAGTCTGGTTTATCAAACTTCATTCCTATACTCATTGCGGACAAAGGAATCTGCACTGAGATGAAGACACTACAGCAAAAATTAGATGTGTCTCCCCTTTCTAAACAATTCCAGTCTAAATCTGGTGGTTCTATCTGCAGCTCATGTGAAGCTTTTGCACATAGACACGCATCATCATCAGACTTACTTGTAGATATAGCATGGTTGCTTAAGGACCCTACTTCAGAAAATTTTGATAGAGTGATGTCGGCTTTGCAAATTGAAAGATACTGTTATTTGTTGGACTTTCTAATGTGCAATGACTCAACAACCATTTTGGAAAAAATATTACCAAATTTGGTAATCTTGACAGAAAGCATGAAAACAAATGTCATGGGTAATAGTACAAGTAATGTTGACTTGACGCAGCTATTCAATCGCATCCATGGTGCTAGACAGGTTATTTATCAGAAATGCCAGAAAGGCAGAGGTATAGTTGTGCACTCTGAAATGGAAAGCTTTAAGGTTGCTCAGAGCTCTTCTCAGGATAACGTGCCATTAGTTGCAAAATATAAAGTTCAGGATATTCTGTCCAGAGCAGATTCAATGTTGGGAGCACTGAGAAGTCCAACTTCAAATGACAAAAATGATAGGATGCCACTTTTGAAAAGGGAGATTATAATGAATGTGGACGAATTCCCTAAACAATCTTGCCGTCGATATCTTGCTAGGAGATCTTTTAGCACTCGACCGGCAATTTTTGTCATTGCTTCAGTTGCTGTTTGTCTTGGGGTATGTGTAGCCTTCCTTCACCATGGGAAGGTTACTGAGTTAGCTGTATCCATTAGAAGGTGCTTGTTTAATTATTCCTAG 2652 0.4521 MVHIPIRIIGHNSQNKTNTAHTQQQTKPSHRNHQPPPPPPYLTFSANQPTNQPNIHPSQPLLSIRVPMEPLPSPPPPPPPPPPRQQQQQHPLPPNNNIVMDVTTPDDPSSSLWDLSYLLDFNLDEQMPFPVVDLPTTPSPPPQPSDLDPPLHPQPHDVPTLPINDTRVRKRDPRLTCSNFIAGRVPCACPELDAKLEEEGLPGKKRVRSSARGGSPARCQVPGCEADITELKGYHRRHRVCLRCANATTVLLHGEPKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKPSDSRAPADHEPQPVTQNEDSNNDGEAGKDGSNLSSEINEQEVSLDHEDEPVAILSAAPEMQNIANDSVVSFVASGETQVNSGKDVSNISNSPSYCENKSAYSSLCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPLELEGYIRPGCTILTIFIAMPNIMWINLREDPMHYVCDLVAPRRMLSGRGTALVHLNDMIFHVMKDGTSVSKVEVNMQAPRLHYVHPTYFEAGKPMELLACGSNLLQCKFRFLVSFSGKYLKCEYCVPSPHDWTGDSISCAFDSQLYKICVPHTEENLFGPAFIEVENESGLSNFIPILIADKGICTEMKTLQQKLDVSPLSKQFQSKSGGSICSSCEAFAHRHASSSDLLVDIAWLLKDPTSENFDRVMSALQIERYCYLLDFLMCNDSTTILEKILPNLVILTESMKTNVMGNSTSNVDLTQLFNRIHGARQVIYQKCQKGRGIVVHSEMESFKVAQSSSQDNVPLVAKYKVQDILSRADSMLGALRSPTSNDKNDRMPLLKREIIMNVDEFPKQSCRRYLARRSFSTRPAIFVIASVAVCLGVCVAFLHHGKVTELAVSIRRCLFNYS* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0741 883 MobiDBLite consensus disorder prediction 283 327 - -
Dod03g0741 883 MobiDBLite consensus disorder prediction 133 157 - -
Dod03g0741 883 ProSiteProfiles Zinc finger SBP-type profile. 216 293 IPR004333 GO:0003677
Dod03g0741 883 MobiDBLite consensus disorder prediction 45 59 - -
Dod03g0741 883 SUPERFAMILY SBT domain 217 296 IPR036893 GO:0003677|GO:0005634
Dod03g0741 883 Pfam SBP domain 219 293 IPR004333 GO:0003677
Dod03g0741 883 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 108 880 IPR044817 GO:0003677
Dod03g0741 883 MobiDBLite consensus disorder prediction 1 109 - -
Dod03g0741 883 MobiDBLite consensus disorder prediction 10 30 - -
Dod03g0741 883 MobiDBLite consensus disorder prediction 90 109 - -
Dod03g0741 883 MobiDBLite consensus disorder prediction 307 327 - -
Dod03g0741 883 MobiDBLite consensus disorder prediction 130 164 - -
Dod03g0741 883 Gene3D - 209 280 IPR036893 GO:0003677|GO:0005634
Dod03g0741 883 MobiDBLite consensus disorder prediction 67 89 - -
Dod03g0741 883 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 108 880 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0741 Dod-Chr3 9187850 9195716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0741 100 876 SBP-box Gene Family AT5G18830 48.055 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod03g0741 SBP 2.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0741 - - aprc:113863838 1121.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0741 03 9187850 9195716 Dod03g0741 03 9187850 9195716 ECH