Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0737 ATGCAAGCAACTCAAGCATCAGCCACTGATGAAGTTTCTGAGATTTCCCAACAGGTTGACCCCCAGCCAAACAAAGAAGTTTCAGATAACAGGTCTAGTGGGAAGCGTCCAGATATTTCACTTCAAGTTCCATCTAGACCATTAGGGTTTGGCAGCACCTGTGGTGGAAGGGTACTGGACCATTCTCAAAGTTTCTCTAAGGGGATCTCATCATCAAGAGGCTTCTTGCAGGCCTTGAGCTTCAAAAGAAAAGCGAATGTAGCAGATGGTGAAAGAAGCTGCCTCCTTAATTCAGACCCCAAGACACCCGCAGACAGTTCTAATATGGCTTCCATATCTGAAGCTGCATGGAATAGATGCACTTCTCTTCCTGTTACTCCTGCATCAAATCTGTCCCCTTCAGTTTCTATGCCTGTTTCTGCCAGGACATATAATGAACAGACTAAGCCACATAAAGACGTTCGATCTAAGGTTTCAAGGTCCCTTTCTGTACCTGTACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGTAGTGAACAGGATCAACAAGATCCAAATGATGATCAGATAACCCCTGTGCCAGCAGAAGGTGTGGATGATGAGGAAATTCCTGAAGAGGAAGCGGTGTGCAGGATATGTCTTGATGTGTGTGATGAAAGAAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTGCAATTAAATGGTTTAGCACAAAAGGAAATAAGAAATGTGAGGTATGTGGGCAAGAGGTTCAGAATTTACCTGTAACTTTGCTCCGTGTGTCCAGTTCTGTTCAACGGCAAAGCAGACAGTCTCAGGGTCAACAGAACCTACATTCGGAGTCAATAAGTGCCTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAGCTACTGCTTCCTGATTTGAAGACTCAAGCCATCATTATAGCAGCACCTTTTGCCTTTACCTTGGGCCTCCTGGCATCTATTTTTGCAGTCATCCTTGCAATCAGAGAGTATATATGGACATATGCTGCTCTTGAGTTTGCTCTTGTGGCTATAATTGTGCATCTTTTTTATACTATGTTGCATTTGAAGGCCATCTATGCAATACTACTTTCGTCAGTTTTGGGTTTTGGAATTGCAATGGGCATCAATTACTTATATATCCAGTATGTTACATGGCGACTTCAGGTCTCTCATAATGATAGCCCAGTATGA 1266 0.4265 MQATQASATDEVSEISQQVDPQPNKEVSDNRSSGKRPDISLQVPSRPLGFGSTCGGRVLDHSQSFSKGISSSRGFLQALSFKRKANVADGERSCLLNSDPKTPADSSNMASISEAAWNRCTSLPVTPASNLSPSVSMPVSARTYNEQTKPHKDVRSKVSRSLSVPVRNVVIVRSVSFSTRSEQDQQDPNDDQITPVPAEGVDDEEIPEEEAVCRICLDVCDERNTFKMECSCKGDLRLVHEECAIKWFSTKGNKKCEVCGQEVQNLPVTLLRVSSSVQRQSRQSQGQQNLHSESISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIIAAPFAFTLGLLASIFAVILAIREYIWTYAALEFALVAIIVHLFYTMLHLKAIYAILLSSVLGFGIAMGINYLYIQYVTWRLQVSHNDSPV* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0737 421 PANTHER ZINC FINGER PROTEIN 1 421 - -
Dod03g0737 421 SUPERFAMILY RING/U-box 209 263 - -
Dod03g0737 421 Pfam RING-variant domain 213 259 IPR011016 GO:0008270
Dod03g0737 421 CDD RING_CH-C4HC3_MARCH 213 260 - -
Dod03g0737 421 PANTHER OS02G0165000 PROTEIN 1 421 - -
Dod03g0737 421 MobiDBLite consensus disorder prediction 1 54 - -
Dod03g0737 421 MobiDBLite consensus disorder prediction 177 204 - -
Dod03g0737 421 SMART ringv_2 212 260 IPR011016 GO:0008270
Dod03g0737 421 MobiDBLite consensus disorder prediction 1 39 - -
Dod03g0737 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 268 IPR013083 -
Dod03g0737 421 ProSiteProfiles Zinc finger RING-CH-type profile. 205 266 IPR011016 GO:0008270
Dod03g0737 421 MobiDBLite consensus disorder prediction 177 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0737 Dod-Chr3 9128426 9136293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0737 226 321 C3H Transcription Factor Family AT5G59000 31.250 1.94e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0737 - - gmx:100527094 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0737 03 9128426 9136293 Dod03g0737 03 9128426 9136293 ECH