Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0729 ATGAATAAGCATGATAGACCGAAGCTGAGCAAAATACATTGGCATTATATAATAATTGATGAAGGTCACCGCATAAAGAATGCTTCTTGCAAATTGAATGCTGACTTGAAACTCTATCAGAGCTCTCATAGATTGTTGTTAACTGGAACACCATTGCAGAACAATCTTGAGGAACTGTGGGCGCTGCTTAACTTCTTGTTACCAAACATATTCAATTCATCCGAGGATTTTTCTCAGTGGTTTAATAAGCCATTTGAGAGTACTGGAGATAACTCTCCCGATGAAGCCTTACTGTCTGAGGAGGAGAACCTCTTGATTATCAATCGTCTGCACCAAGTTCTGAGGCCATTTGTACTTCGGAGGCTGAAACACAAGGTTGAAAATGAACTTCCTGAAAAGATTGAAAGACTTGTAAGGTGTGAGGCATCCGCATATCAAAAACTTTTGATGAAGAGGGTGGAAGAAAATCTTGGTTCTATTGGCACTACAAAGGCTCGATCAGTACACAACTCTGTCATGGAGCTTCGTAATATATGCAATCATCCATATCTCAGCCAGCTTCATGCAGAGGAGGTGGATAGCTTTATACCTAAGCATTATTTGCTGCCGATTGTTAGACTTTGTGGGAAGCTCGAGATGTTGGACCGTATATTACCTAAATTGAAGGCAGCAGATCATCGGGTTCTTTTCTTTTCAACAATGACCAGACTTCTTGACGTTATGGAGGAATACTTAACCCTAAAACAGCATCGATACCTACGGTTGGATGGGCATACCTCAGGAGGTGATCGTGGTGCCCTAATTGAACGGTTTAACCAACCTGGTTCTCCATATTTTATATTTTTACTCAGCATTCGAGCTGGTGGTGTTGGAGTGAATCTTCAAGCAGCAGACACAGTGATCCTATTTGACACTGACTGGAATCCACAGGTTGATCTGCAAGCCCAGGCAAGAGCTCATAGAATTGGTCAGAAGAAGGATGTTCTAGTTCTTCGATTTGAAACAGTTCAAACTGTTGAAGAACAAGTCAGAGCTGCTGCTGAGCACAAACTAGGCGTTGCTAATCAAAGCATTACTGCGGGTTTTTTTGACAACAATACAAGTGCTGAGGATCGGAGAGAATACTTGGAATCACTTTTGCGTGAGTGTAAAAAAGAGGAAGCTGCACCTGTTTTGGATGATGATGCTTTGAATGATCTCTTAGCACGCAGTGAATCAGAGCTAGATGTGTTTGAGGCTGTTGACCAGAAAAGGCGTGGAGATGAAATGGCTACATGGAAGAAGTTGGTGCTTGGCCATGCAACTGATGGTTCTGAACTTATTCCTCCCCTTCCTTCTCGTCTTGTCACTGATGAAGACTTGAAACAATTCTATGAAGCAATGAAGATATCTGATGTGCCCAAGGTTGAAGTAGCATCTAACGGATTAAAGCGTAAGAGTGGATATCTTGGGGGCCTTGATACTCAGCATTATGGCAGGGGAAAACGTACAAGAGAGGTGCGTTCCTATGAAGAGCAATGGACAGAGGAGGAGTTTGAGAAGATGTGTCAGGCAGAATCTCCAGAATCACCGAAAATAAAAGAAGAGATGACAGAGACAAACAGCCTAACAAATGCTTCCAGCTCTACCATATCTACTTCTGTCACACAGCCTACAGTTGTGCCTCCAGTGGCCCCAACACTGTCATCTGTTGGGAATTTGCCACTACAGCAAGTCAAAGAGATAACACCACCTGCTAAACGTGGACGTGGAAGGCCAAGAAGAATAACTTCAGATAAGTCACCAGTAACAGTGGTACCTCCGGTTACTTCTGGAAATTTGTCTGGCCAATTAGTATCATCGACTCCTAAGCCCATTGCTCATTCTTCTGAAGTTACCGGTGTGAGTGGACCTTTACAGCAGTCTGACACTGGGGTTTCTCCTAACCCAACCATTACACCCAATTCTCAAGCAGATGGTACTCCTGTTTCTGCACCTATACAAGCAAGAGGACAAGGGCGGAAATCTCAAAGTGGAGGGGATGCAACTAGACGTAGAGGGAAGAAGCAGGTGGTGGTGTCACCTCCTATTACTGGTGGTTCTGTTGGTCCTGATTTAAAGGTGAATGAGCAGTTGGAGCACAAACTCACAAATCTATCTGCAGATGAATCTATCTCAAAGAGTGAAATTGTTTCCTGCAGTGCTATGGTACACCATCCAAGTACTGAATCAGGTTCTAGGTCTTTAAACAGTGGAAATGATAATCTTTTGGGTGTTGGGATTGCTTTGAATTCTCAGCAACCCGTTCCTCTGTCCTCTGTTACTCCCTTGCCTCAAATTGCTCCCACTTATCCCTCTGTACCAATACAAAATATTGGGCAAAATCAAAAGCCACAAAATGGATCAGGAGCTCCCCGGCGTAGGGGAAAGAAACAATCAATGGCATTGCCTATTCCAGATGTTCTAGATAGTCAGGATATGCATCTAGCATCTAATCTACAAAGTTCATCAGGCAGTATATCACGTGATAAAGTCACTGAATCTAAAAGCTTGCGAGAGAATGTTCAGGAATCAAACCATGTTATCCAGGATCAGGCATTACATAGCGTAGGTGAACAGGATGTAGAATCAACTGAAGGATCAGATGATTTAGCCAAGCAGGCAGTGATCTCATCATCAACTAAGAAATCTCCCGGGCTGGAAATAAAGGTTCAGAATTCTGATATGCATGATTCTGCTTCTGACACTTTATCCGAGACTGCAGTTCTTGAGAATTCAGGGAATGAAAATGTGTGCGCCTCAGCACTTCCTGTTACAGAGGTTACAAAGGACCAGCATTTGGAGGCCAAAACTCATCACTCTGCTGAAGCTTTAAAAGCTGTCGCTTCTGTTGGTCCTCCAATCAATATCTTCCCAAGTAGTGCACCAACGGGAAGTTTTAATAAGGCTATAGAACCTGTGACTGCTGAGGCTGTTCCCAATGCATCATCAGGCATTGTTCATCCTTCCATATCAGACTCTGAATCTATTCATGCTTGCCCCCCTGAATCCATGGACAGTCAAAAGGCAAGGCCGTAA 3057 0.4341 MNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKLYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESTGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGTTKARSVHNSVMELRNICNHPYLSQLHAEEVDSFIPKHYLLPIVRLCGKLEMLDRILPKLKAADHRVLFFSTMTRLLDVMEEYLTLKQHRYLRLDGHTSGGDRGALIERFNQPGSPYFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVQTVEEQVRAAAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALNDLLARSESELDVFEAVDQKRRGDEMATWKKLVLGHATDGSELIPPLPSRLVTDEDLKQFYEAMKISDVPKVEVASNGLKRKSGYLGGLDTQHYGRGKRTREVRSYEEQWTEEEFEKMCQAESPESPKIKEEMTETNSLTNASSSTISTSVTQPTVVPPVAPTLSSVGNLPLQQVKEITPPAKRGRGRPRRITSDKSPVTVVPPVTSGNLSGQLVSSTPKPIAHSSEVTGVSGPLQQSDTGVSPNPTITPNSQADGTPVSAPIQARGQGRKSQSGGDATRRRGKKQVVVSPPITGGSVGPDLKVNEQLEHKLTNLSADESISKSEIVSCSAMVHHPSTESGSRSLNSGNDNLLGVGIALNSQQPVPLSSVTPLPQIAPTYPSVPIQNIGQNQKPQNGSGAPRRRGKKQSMALPIPDVLDSQDMHLASNLQSSSGSISRDKVTESKSLRENVQESNHVIQDQALHSVGEQDVESTEGSDDLAKQAVISSSTKKSPGLEIKVQNSDMHDSASDTLSETAVLENSGNENVCASALPVTEVTKDQHLEAKTHHSAEALKAVASVGPPINIFPSSAPTGSFNKAIEPVTAEAVPNASSGIVHPSISDSESIHACPPESMDSQKARP* 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0729 1018 Gene3D - 127 418 IPR027417 -
Dod03g0729 1018 MobiDBLite consensus disorder prediction 824 894 - -
Dod03g0729 1018 PANTHER SNF2/RAD54 HELICASE FAMILY 1 1015 - -
Dod03g0729 1018 MobiDBLite consensus disorder prediction 778 795 - -
Dod03g0729 1018 MobiDBLite consensus disorder prediction 559 698 - -
Dod03g0729 1018 MobiDBLite consensus disorder prediction 988 1018 - -
Dod03g0729 1018 MobiDBLite consensus disorder prediction 877 894 - -
Dod03g0729 1018 MobiDBLite consensus disorder prediction 848 867 - -
Dod03g0729 1018 Pfam SNF2-related domain 3 184 IPR000330 GO:0005524|GO:0140658
Dod03g0729 1018 Pfam Snf2-ATP coupling, chromatin remodelling complex 418 513 IPR029295 GO:0042393
Dod03g0729 1018 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 213 359 IPR001650 -
Dod03g0729 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 121 IPR027417 -
Dod03g0729 1018 Coils Coil 366 386 - -
Dod03g0729 1018 MobiDBLite consensus disorder prediction 596 656 - -
Dod03g0729 1018 PANTHER CHROMATIN STRUCTURE-REMODELING COMPLEX PROTEIN SYD 1 1015 - -
Dod03g0729 1018 MobiDBLite consensus disorder prediction 778 806 - -
Dod03g0729 1018 Gene3D - 1 120 IPR038718 -
Dod03g0729 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 382 IPR027417 -
Dod03g0729 1018 SMART helicmild6 239 323 IPR001650 -
Dod03g0729 1018 Pfam Helicase conserved C-terminal domain 210 323 IPR001650 -
Dod03g0729 1018 CDD SF2_C_SNF 207 333 - -
Dod03g0729 1018 SMART SnAC_2 416 513 IPR029295 GO:0042393
Dod03g0729 1018 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 69 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0729 Dod-Chr3 9077298 9087667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0729 210 381 RAD5 or RAD16-like Gene Family AT5G43530 36.782 8.26e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod03g0729 SNF2_N 1.3e-39 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0729 - - adu:107482715 1534.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0729 03 9077298 9087667 Dod03g0729 03 9077298 9087667 ECH