Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0728 ATGGCATCTTCAAATAATGTTGAGTTGGAAGCGGCAAAGTTTCTGCACAAACTCATCCAAGATTCCAAGGATGAGCCAGCCAAATTGGCTACTAAACTCCATGTGATACTACAACACATGAAATCAAGTGGGAAGGAACATTCAATGCCATATCAAGTGATATCAAGGGCAATGGAGACTGTCATCAATCAGCATGGTCTTGATATTGAAGCACTGAAGTCATCACGTCTTCCCTTGTCATGCGGTGCTCAAATAGGATCTTCACAGGCAGTAGGTGGTGCTACAGATTCAAGAGTGGGCTTGGCTGAAAATGAGATGCCCAAAATGGATTCCCTTGCTTCTGGCCGGCCACCTGTTGCCCCAAGTAGTGGAGCTCCTGATTATTATCAAGGCTCTGTGGCTCAGAGGAGTAGTCAGTCTTTTGATCAAGAAAGTCCATCTAGTTTGGACTCTAGGTCTGCTAACTCACAGTCACAAGATAGACGTGATGCTGCTAAATTGGACAAAAAGGTGAAACAAAAGCATGGTAAGAAAGCTGCCTCAAAGAGAAAGAGGGGGGATACATCATCACCTGTAGAACTGCATGTTGACAATCCTTCTCAACCAGATCACCGAAATACTGCTAATATGAGGAAGGGTAAAATGGCCAAGGCTGAACCATCAGATGGTCTTTCAGTCAAAAGCGGAGAACTGACTAACTTCAATAGGGTTCCAAGTAGCAGCCAAATGGATAATTCTCTGGCTTTGCTTGGTAGCATGAGAACAATGCACAGGGCCAAACAAGAAGGTTCTCACTTATTGGAACAGCAAACAGATTGGGCAAAGATTGGCAATTCAATGCCATGTGCTCCAAATTCTAAATATCCAGAAGATACGGAGGTTTCATCTGCCCATATTGCTTCTGGAAAACATCAAGGTGCTTATCCAAAGGTTCATCGAGGGGCGGGGGTTGCTACTAGTGCATATACAATGGGTGAACCAGTTTTACCAAATGCGATGCGGTATGGTGGTATGCTTGAGCATGATGTTGGAAGTTCTACTTCTTTAGCTGATGGACATAAAATAGCTCAGATTGACAGGCAAAGTAGTAACTCAGAAATGACTATGCTTAGACAAGGTGTTCCTCCCAGAGACATGGGAAAATCCACAGTTTCTGCTGTGCGTGAATCATCCACCATGCCTTTCAAAGAACAACAGTTAAAACAGCTTCGAGCTCAGTGCCTTGTTTTTCTAGCATTTAGAAATGGTTTACCACCAAAGAAATTACACCTTGAAATTGCTCTTGGAACCACCTTTTCTAGAGAAGGAAAAGATCTTACTGACCACAAAGGAAAATCACAATCTTCTAATGATTTGGGTAACTCATCTGGGGTCATGATACCTTCAGGGCCCCCTTCTGCTGGAAAAGCTCAAGAAGCTGATTCTTCCTCAAAGGGAGCTGAGAGCCCAAGAATGATGGAGGACAAAGGTATGCTTTCAGAAGACAGGAAACATCTAGCTGCAAAAAAAGTAGAGTTTGAAAAGCAAATTCAAGAAAGAGTCACTGTGCAAGCTTCCCCAGTGACCTCTTTCCAGCAGCAAAATTTTTCAAGTACAAAGGGTGATGTTGACAATGGTAATCTGCTGGTTGGAAGGTCCAACCAACCCTCTTCTGTCATTGGCCTGAATAAGCAGGTGAATCCTGAGGTCAATAGCTGGCCTGGATTTGCTATTCCTAATGAGGCTTCAAAAGGACCCTTGCAAGTCTCTTCTGTTCAGAATGAGTTGCCTATAGAAAGAAGAGACAATATTCCTTGTCAGTCTCAAAATATTGTTAACAACAGTGGTTTCCGGAATCACAATTCTGTTAATCACTTGGCTTATTCTTTAAAAGAGCATTGGAAACCTGTTCCAGGGACTGACATCGATCACCAAGGAGCAACCATGATGAAGGATGCAGATTTAATTGCAAAACATGTTTCTTCAGATGGGTTCAAAACAATTCCTGTTGATGATGCATCTAGACATGATGCTTTTCTTACTACTGAGCAGGAAGGGAATGAGAGGTTTACATTGCCACCTCCAAAAAATACAATGTCAGAGAGATGGATTATGGATCAGCAGAAAAAGAGGCTTCTAGCTCAACAAAACTGGGTACAAAAACAGCAAAAAACAAAGCAAAGAATGACTACATGTTTCCTCAAGCTGAAGGAAAATGTGAGCTCATCTGAAGATATATCTACTAAAACAAAAAGTGTCATTGAGTTGAAGAAACTTCAGCTATTAGACCTCCAACGTCGTCTCCGTAGTGATTTTCTGAATGACTTTTTCAAACCAATTACAACTGAGATGGACCACTTGAAGACAGTTAAGAAACATAGGCATGGTAGGAGGGTCAAACAACTAGAAAAATATGAGCAGAAAATGAGGGAAGAACGTCAAAAAAGAATTCGCGAAAGACAGAAGGAGTTTTTTGGTGAGATAGAAGTTCACAAGGAAAAACTTGATGATGTATTCAAAGTCAAGAGGGAACGGTGGAAGGGTTTCAATAGATACGTGAAGGAGTTCCATAAAAGAAAAGAGCGTATTCATCGTGAGAAGATTGATAGAATTCAGCGGGAGAAGATTAATTTATTGAAAATAAATGATGTGGAGGGTTATCTACGGATGGTGCAGGATGCAAAATCTGATCGTGTGAAGCAACTTCTTAAAGAGACTGAGAAGTATCTTCAAAAGCTTGGTTCCAAGCTGCAGGAAGCAAAGGCTGTAGCAGGTCGCTTTGAACATGATGTTGACGAGGCACGAAGTGGCAGTTATCTTGAGAAGAGTGAACCTACTCTTGAAAATGAGGATGAAGGTGATCAGGCCAAGCATTATTTGGTAAGCAATGAGAAATATTATATGATGGCCCACAGTGTAAAGGAGAGCATTGCAGAGCAGCCATCTTGTTTGCAGGGCGGAAAATTGAGGGAGTATCAAATGAACGGCCTGAGGTGGCTTGTTTCCTTATACAACAATCACTTGAATGGAATCCTTGCTGATGAAATGGGACTGGGTAAAACTGTCCAGGTTATTTCTCTAATTTGCTACCTGATGGAATCTAAAAATGATAGGGGGCCATTTCTTGTTGTTGTGCCCTCTTCAGTTCTACCTGGCTGGGAGTCGGAAATCAACTTTTGGGCTCCTAGTGTTCATAAAATTGTTTATGCTGGACCACCAGAAGAGCGGCGCCGGTTATTCAAGGAAAAAATTGTTCACCAGAAATTCAACTGTCCTGTTGACAACGTATGA 3270 0.4196 MASSNNVELEAAKFLHKLIQDSKDEPAKLATKLHVILQHMKSSGKEHSMPYQVISRAMETVINQHGLDIEALKSSRLPLSCGAQIGSSQAVGGATDSRVGLAENEMPKMDSLASGRPPVAPSSGAPDYYQGSVAQRSSQSFDQESPSSLDSRSANSQSQDRRDAAKLDKKVKQKHGKKAASKRKRGDTSSPVELHVDNPSQPDHRNTANMRKGKMAKAEPSDGLSVKSGELTNFNRVPSSSQMDNSLALLGSMRTMHRAKQEGSHLLEQQTDWAKIGNSMPCAPNSKYPEDTEVSSAHIASGKHQGAYPKVHRGAGVATSAYTMGEPVLPNAMRYGGMLEHDVGSSTSLADGHKIAQIDRQSSNSEMTMLRQGVPPRDMGKSTVSAVRESSTMPFKEQQLKQLRAQCLVFLAFRNGLPPKKLHLEIALGTTFSREGKDLTDHKGKSQSSNDLGNSSGVMIPSGPPSAGKAQEADSSSKGAESPRMMEDKGMLSEDRKHLAAKKVEFEKQIQERVTVQASPVTSFQQQNFSSTKGDVDNGNLLVGRSNQPSSVIGLNKQVNPEVNSWPGFAIPNEASKGPLQVSSVQNELPIERRDNIPCQSQNIVNNSGFRNHNSVNHLAYSLKEHWKPVPGTDIDHQGATMMKDADLIAKHVSSDGFKTIPVDDASRHDAFLTTEQEGNERFTLPPPKNTMSERWIMDQQKKRLLAQQNWVQKQQKTKQRMTTCFLKLKENVSSSEDISTKTKSVIELKKLQLLDLQRRLRSDFLNDFFKPITTEMDHLKTVKKHRHGRRVKQLEKYEQKMREERQKRIRERQKEFFGEIEVHKEKLDDVFKVKRERWKGFNRYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQEAKAVAGRFEHDVDEARSGSYLEKSEPTLENEDEGDQAKHYLVSNEKYYMMAHSVKESIAEQPSCLQGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMESKNDRGPFLVVVPSSVLPGWESEINFWAPSVHKIVYAGPPEERRRLFKEKIVHQKFNCPVDNV* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0728 1089 ProSiteProfiles HSA domain profile. 800 874 IPR014012 -
Dod03g0728 1089 MobiDBLite consensus disorder prediction 156 170 - -
Dod03g0728 1089 MobiDBLite consensus disorder prediction 927 946 - -
Dod03g0728 1089 MobiDBLite consensus disorder prediction 435 489 - -
Dod03g0728 1089 Pfam SNF2-related domain 986 1069 IPR000330 GO:0005524|GO:0140658
Dod03g0728 1089 MobiDBLite consensus disorder prediction 108 228 - -
Dod03g0728 1089 Coils Coil 795 815 - -
Dod03g0728 1089 MobiDBLite consensus disorder prediction 128 155 - -
Dod03g0728 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 957 1075 IPR027417 -
Dod03g0728 1089 PANTHER CHROMATIN STRUCTURE-REMODELING COMPLEX PROTEIN SYD 93 1083 - -
Dod03g0728 1089 PANTHER SNF2/RAD54 HELICASE FAMILY 93 1083 - -
Dod03g0728 1089 MobiDBLite consensus disorder prediction 446 461 - -
Dod03g0728 1089 Coils Coil 896 916 - -
Dod03g0728 1089 Gene3D - 950 1086 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0728 Dod-Chr3 9069500 9077290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0728 964 1064 RAD5 or RAD16-like Gene Family AT1G05120 39.091 1.66e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod03g0728 SNF2_N 1.1e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0728 - - ahf:112795784 1620.91