Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0721 ATGCCAACAATGATAAGGAGCATATTCCAGGACATGAGGTCTCGCTCCCACCGCGTCGTGCAGGACACTTCCTCCATCAACATCAACATCATCGACAAGCCCTCCGAGGTTGTCGGCGACGACGACCATGACAACGCCATGAGGCAGAGCTGCTGGGCCCACATGCCGCAGGAGCTCCTCAGAGAGGTCCTCCTCAGGATTGAGGCGTCGGAGGCCCGGTGGCCGCCGAGGAAGAGCGTGGTGGCCTGCGCCGGAGTGTGCCGCAGCTGGAGGCACATCACCAAAGACATCGTCAAGACCCCTGAACTCTCCTCCAAGATCACCTTCCCAATCTCTGTTAAGCAGCCTGGTCCAAGGGAGAATCTCCTCCAGTGCTTTATAAAGCGCAACCGGACCACCCAAACATATTATTTGTATCTGAGTTTAACTAATACCCTAGCAGATGACGGGAAGTTCCTTCTGGCTGCACGAAAGTGCAGACGTCCCACCTGCACGGATTATATCATCTCTTTAAATGCAGATGACATGTCAAAGGGAAGCAACACCTATGTTGGGAAACTGAGATCAAATTTTCTGGGAACCAAGTTCACAATCTATGATGGCCAGCCACCTCATGCTGGGGCAAAGATTGCAAAAAGCCGCTCCACTAGGCTGGTGAATCTAAAACAAGTTGCACCCAAGGTCCCTACAGGCAACTATCCTGTGGCTCACATATCATATGAGTTGAATGTGCTAGGCTCCAGGGGGCCTAGGAGAATGCATTGCGTCATGGATTCCATTCCTGCCTCTGCAATTGAACCAGGAGGGGTAGCTCCGACACAGACTGAGTTTTCCCTTAGCAACATAGATATGTTTTCCATATTCCCTTTTTTCCGATCAAAATCAAATCGTGTAGAAAACTCCCTATCTGGACCCCTCGGTGATCAAAAGGATGGGTTGCTAGTGTTGAAAAACAAGGCTCCCAGGTGGCATGAGCAGTTGCAGTGTTGGTGCTTAAACTTTCATGGACGTGTCACAATTGCCTCGGTTAAAAACTTTCAGCTGGTGGCTTCCCCAGAAAATGGACCTGCTGGGCCAGAACATGATAAGATCATACTCCAATTTGGAAAAGTTGGGAAGGATCTATTTACAATGGATTATCGATACCCTATCTCTGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCATGTGAATGA 1215 0.4955 MPTMIRSIFQDMRSRSHRVVQDTSSININIIDKPSEVVGDDDHDNAMRQSCWAHMPQELLREVLLRIEASEARWPPRKSVVACAGVCRSWRHITKDIVKTPELSSKITFPISVKQPGPRENLLQCFIKRNRTTQTYYLYLSLTNTLADDGKFLLAARKCRRPTCTDYIISLNADDMSKGSNTYVGKLRSNFLGTKFTIYDGQPPHAGAKIAKSRSTRLVNLKQVAPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPASAIEPGGVAPTQTEFSLSNIDMFSIFPFFRSKSNRVENSLSGPLGDQKDGLLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0721 404 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 10 404 - -
Dod03g0721 404 SUPERFAMILY Tubby C-terminal domain-like 101 404 IPR025659 -
Dod03g0721 404 Gene3D Tubby Protein; Chain A 109 404 IPR025659 -
Dod03g0721 404 ProSitePatterns Tub family signature 2. 389 404 IPR018066 -
Dod03g0721 404 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Dod03g0721 404 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Dod03g0721 404 PRINTS Tubby superfamily signature 316 333 IPR000007 -
Dod03g0721 404 PRINTS Tubby superfamily signature 334 350 IPR000007 -
Dod03g0721 404 PRINTS Tubby superfamily signature 361 380 IPR000007 -
Dod03g0721 404 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Dod03g0721 404 PRINTS Tubby superfamily signature 382 404 IPR000007 -
Dod03g0721 404 ProSitePatterns Tub family signature 1. 334 347 IPR018066 -
Dod03g0721 404 Pfam F-box domain 52 99 IPR001810 GO:0005515
Dod03g0721 404 Gene3D - 45 106 - -
Dod03g0721 404 SUPERFAMILY F-box domain 45 96 IPR036047 GO:0005515
Dod03g0721 404 Pfam Tub family 113 399 IPR000007 -
Dod03g0721 404 PANTHER TUBBY-RELATED 10 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0721 Dod-Chr3 8975559 8980275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0721 9 404 TUB Transcription Factor Family AT2G47900 71.178 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dod03g0721 Tub 1.3e-113 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0721 K19600 - gmx:100778346 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0721 03 8975559 8980275 Dod03g0721 03 8975559 8980275 ECH