Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0709 ATGGCGAGGCCTTCGAAGCCGCAGGTATCTTCCGACGAAGCTCTCTCCAACGGCTCCACCTCCGAGGAGGAGGAGGAGCAGGTCAACCAGCAGATCAATGAGGAGGAGGACGAGGAGGAGCTCGAGGCGGTGGCACGTCAAGCTAGCTCCGATGACGAAGACGAAGTCGCTGACGGAAATCTGCCGGACTCCGACGAAGATCCTGCCGCCGCCGAATACGCCGACGAGGATGAGCGGGGTGGAGATAGTGTTGATCCGGAAGTTAGCAAGCGTGAGAAAGCTAGATTGAGAGAGATGCAGAAAATGAAGAAACAGAAGATTCAGGAGATATTGGATGCGCAAAATGCAGCCATTGATGCTGACATGAACAATAGAGGAAAAGGGAGGCTGAAGTATCTCTTGCAGCAGACTGAGCTGTTTGCTCATTTTGCGAAAGGTGATCAGTCTTCATCCCAGAAGAAGTCAAGGGGAAGGGGTCGCCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAATACCTAAAAGAAGAAGAAGATGGTGTAACAAACACTCGTTTGGTGGCACAGCCTTCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGCCTAAACTGGCTCATAAGATTGTATGAGAATGGAATAAATGGAATTCTGGCTGATGAAATGGGACTTGGTAAAACATTGCAAACTATATCTTTATTGGGTTATTTGCATGAGTTCAGAGGAATCAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGACGCTTTTGTCCTATTCTGCGTGCAATAAAGTTCCTTGGCAACCCTGATGAAAGGAGACATATAAGAGAGGAATTGTTGGTTGCGGGGAAGTTTGATGTTTGTGTTACGAGTTTTGAGATGGCGATCAAGGAGAAGTCTGCTTTGCGTCGATTTAGTTGGCGCTACATCATTATTGATGAAGCCCATCGAATCAAGAATGAAAATTCCCTCCTGTCCAAAACAATGAGGCTCTACAATACAAATTATCGCCTCCTTATTACTGGCACACCGCTCCAGAACAATCTGCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATCTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAGAATGACCAACAGGAGGTTGTTCAACAATTACACAAGGTCCTCCGACCATTTCTCCTTCGAAGGTTGAAGTCAGACGTTGAGAAAGGGTTGCCGCCGAAAAAGGAAACCATTCTTAAAGTAGGCATGTCACAAATGCAGAAACAGTATTATAGGGCACTTCTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAACGGAAGCGCCTCCTCAATATAGCTATGCAACTACGTAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAGCCTGGTCCTCCATATACAACAGGAGACCATCTCATTACAAATGCTGGTAAAATGGTTCTTCTGGATAAGTTACTTCCTAAATTGAAAGAGCGTGATTCTCGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTAATGTTTCGTGGGTATCAGTATTGTCGCATTGATGGAAATACCGGTGGAGATGAACGTGATGCTTCCATTGATGCTTTCAACAAACCTGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGGGCTGGAGGACTTGGTATTAATCTTGCTACGGCTGATGTCGTCATTCTGTATGATAGTGACTGGAATCCACAAGTTGACTTGCAGGCTCAGGATCGAGCTCATAGGATAGGTCAGAAGAAAGAAGTTCAAGTTTTCAGGTTTTGCACTGAGTATACAATTGAGGAGAAAGTTATTGAAAGGGCTTACAAAAAGCTTGCACTCGATGCTCTGGTGATTCAGCAAGGGCGGTTGGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGGTTTGGGGCTGAAATGGTTTTCAGTTCCAAAGATAGTACAATTACAGATGAGGATATTGATAGAATCATTGCTAAAGGAGAGGAGGCAACTGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAGGATGCAATCAAATTTAAAATGGATGACACTGCTGAGCTATATGATTTTGATGATGACAAGGATGAGAACAAATTGGATTTCAAGAAAATTGTCAGTGAAAACTGGATTGAACCTCCCAAAAGAGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACATTGCGACAAGGTGGTCCTACTAAACCAAAAGAGCCCCGAATTCCCAGGATGCCTCAGTTGCATGATTTCCAGTTTTTCAATACGCAAAGGCTGAGCGAACTGTATGAAAAGGAAGTACGCTATCTAATGCAAACACATCAGAAGAATCAAATAAAGGACTCGATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTGACTGCTGAAGAGTTGGAAGAAAAGGAACGGCTGCTAGAGGAGGGGTTTTCTTCATGGAGCCGGAGGGATTTTAATACTTTCATTAGGGCCTGTGAAAAGTATGGCCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAAAATATTGAGAGGGGGGAGGCTAGAATTTCACGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAACCCATGGCTAGAGTTGAAGATACAATATGGGCAAAACAAAGGGAAGTTATACAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTCGGCTATGGAAACTGGGATGAGTTGAAGGCAGCATTTCGAACGTCACCATTGTTTCGTTTTGATTGGTTTGTCAAGTCTCGCACAACACAGGAACTTGCAAGGAGGTGTGACACCCTCATTCGGCTGGTAGAAAAGGAAAACCAAGAATATGACGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCAAAGAGCATGACCCCATCAAAGCGTGCCTTGGCAAGACAGACAGAGTCTCCATCTTCTTTGAAGAAACGCAAGCAGTTAGCTGTGGATGATTATGGAAGCTCGGGAAAAAGGAGAAAATAA 3222 0.4327 MARPSKPQVSSDEALSNGSTSEEEEEQVNQQINEEEDEEELEAVARQASSDDEDEVADGNLPDSDEDPAAAEYADEDERGGDSVDPEVSKREKARLREMQKMKKQKIQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKKSRGRGRHASKVTEEEEDEEYLKEEEDGVTNTRLVAQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAIKFLGNPDERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDERDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKDENKLDFKKIVSENWIEPPKRERKRNYSESEYFKQTLRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQTESPSSLKKRKQLAVDDYGSSGKRRK* 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0709 1073 Gene3D iswi atpase 904 936 - -
Dod03g0709 1073 Gene3D - 937 1040 - -
Dod03g0709 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 696 IPR027417 -
Dod03g0709 1073 MobiDBLite consensus disorder prediction 1021 1037 - -
Dod03g0709 1073 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 654 IPR001650 -
Dod03g0709 1073 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 375 IPR014001 -
Dod03g0709 1073 MobiDBLite consensus disorder prediction 9 26 - -
Dod03g0709 1073 MobiDBLite consensus disorder prediction 144 178 - -
Dod03g0709 1073 Pfam SLIDE 906 1016 IPR015195 GO:0003677|GO:0005634|GO:0006338
Dod03g0709 1073 ProSiteProfiles SANT domain profile. 848 900 IPR017884 -
Dod03g0709 1073 MobiDBLite consensus disorder prediction 1 96 - -
Dod03g0709 1073 MobiDBLite consensus disorder prediction 1051 1073 - -
Dod03g0709 1073 CDD DEXHc_SMARCA1_SMARCA5 195 415 IPR044754 GO:0005524
Dod03g0709 1073 Gene3D - 849 903 - -
Dod03g0709 1073 PANTHER SNF2/RAD54 HELICASE FAMILY 9 1073 - -
Dod03g0709 1073 MobiDBLite consensus disorder prediction 751 782 - -
Dod03g0709 1073 Gene3D - 419 711 IPR027417 -
Dod03g0709 1073 MobiDBLite consensus disorder prediction 1021 1073 - -
Dod03g0709 1073 Coils Coil 1006 1033 - -
Dod03g0709 1073 Coils Coil 18 42 - -
Dod03g0709 1073 MobiDBLite consensus disorder prediction 68 82 - -
Dod03g0709 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 413 IPR027417 -
Dod03g0709 1073 Pfam SNF2-related domain 211 478 IPR000330 GO:0005524|GO:0140658
Dod03g0709 1073 SUPERFAMILY Homeodomain-like 904 1026 IPR009057 -
Dod03g0709 1073 SMART helicmild6 529 613 IPR001650 -
Dod03g0709 1073 Pfam HAND 762 844 IPR015194 GO:0003677|GO:0006338|GO:0031491
Dod03g0709 1073 CDD SANT 852 896 IPR001005 -
Dod03g0709 1073 SUPERFAMILY Homeodomain-like 852 902 IPR009057 -
Dod03g0709 1073 CDD SF2_C_SNF 499 624 - -
Dod03g0709 1073 MobiDBLite consensus disorder prediction 27 42 - -
Dod03g0709 1073 Pfam Helicase conserved C-terminal domain 501 613 IPR001650 -
Dod03g0709 1073 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 761 851 IPR036306 GO:0003677|GO:0006338|GO:0031491
Dod03g0709 1073 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 1073 - -
Dod03g0709 1073 SMART ultradead3 194 386 IPR014001 -
Dod03g0709 1073 Coils Coil 89 116 - -
Dod03g0709 1073 Gene3D - 199 414 IPR038718 -
Dod03g0709 1073 Gene3D ISWI, HAND domain 750 848 IPR036306 GO:0003677|GO:0006338|GO:0031491
Dod03g0709 1073 SMART sant 849 898 IPR001005 -
Dod03g0709 1073 SMART sant 951 1012 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0709 Dod-Chr3 8847591 8856306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0709 219 640 RAD5 or RAD16-like Gene Family AT1G02670 27.129 1.57e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod03g0709 SNF2_N 1.2e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0709 K11654 - gmx:100809750 1952.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2726 05 53393454 53401720 Dod03g0709 03 8847591 8856306 PCT