Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0702 ATGTCCACCTCTGGAGCCTCACACACTTCCTTCAAAGGACACGAACCAAATCAAGCACACATGAATTCATCTCCTCCACAACAACTCAACACATCCCCTTCATCATCTGGTGAGAGAAGAGGCAGATCAAGAAAGCAAGCAGAACCAGGGAGGTTTCTTGGGGTAAGAAGACGCCCTTGGGGTAGATATGCTGCTGAGATCAGAGACCCTACAACAAAAGAAAGACACTGGCTTGGAACATTTGACACTGCTGAAGAAGCTGCTCTTGCTTATGATAGAGCTGCTCTCTCCATGAAAGGTGGCCAAGCAAGAACAAACTTCATATACACCGCTGAAAACACCAATAGTGCTTACAATCTCCTCACTCCACCTCAAGTTCTGTTACCAGCTTCTTCACAGTTAATCACAAACACTCAGATCAGCGAACAACCAACCAATCAGAATTTCTTGTCCCACATCGAAAACCCATCAAAGTTGAACAATGACATGGGTGGTGAAACTGCATTTGGTTCACCCCATGATGACAATTTCTTCTTCTCCATTAATGATTCTAGTAGCAATTCTGGCTATTTGGAATGCATAGTTCCTGATAACTGTTTCAGACCTGTTTCCACTGCTACCATAAGTTCAAACACAAGGAAGAGCAATGTGAGTGCTTCAAGTGACCAAAATGTTGTTATTAGCTCCATTAACACAAATTCCATGGAGGGTCAGTCACATGATCCTAACAACACTGCACTCTATCAAGATGCCTTAAACATGCAGACAATGGCATCTAACTATGCAGGATTTTCTTACCAGAGTGAACTTTCAGCAATATTCAAGAACAACCCCTCAAGGGTTGAACTTGAAGATGAAATGTGTCCCATTCCCACCACTACTGAGATCAGTGCAAGCTATGGAGTAATGAGTCATCAGGCTATTCCTTCAAGTACCTGTTCTCCATCAGTTCCTCCTTTTGGGGATGTTGACTTGGGAAACTTACCCTTCTGA 993 0.433 MSTSGASHTSFKGHEPNQAHMNSSPPQQLNTSPSSSGERRGRSRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAALSMKGGQARTNFIYTAENTNSAYNLLTPPQVLLPASSQLITNTQISEQPTNQNFLSHIENPSKLNNDMGGETAFGSPHDDNFFFSINDSSSNSGYLECIVPDNCFRPVSTATISSNTRKSNVSASSDQNVVISSINTNSMEGQSHDPNNTALYQDALNMQTMASNYAGFSYQSELSAIFKNNPSRVELEDEMCPIPTTTEISASYGVMSHQAIPSSTCSPSVPPFGDVDLGNLPF* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0702 330 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Dod03g0702 330 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 330 - -
Dod03g0702 330 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Dod03g0702 330 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Dod03g0702 330 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Dod03g0702 330 MobiDBLite consensus disorder prediction 1 37 - -
Dod03g0702 330 CDD AP2 51 107 IPR001471 GO:0003700|GO:0006355
Dod03g0702 330 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677
Dod03g0702 330 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700|GO:0006355
Dod03g0702 330 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 330 - -
Dod03g0702 330 MobiDBLite consensus disorder prediction 38 52 - -
Dod03g0702 330 MobiDBLite consensus disorder prediction 1 55 - -
Dod03g0702 330 Pfam AP2 domain 54 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0702 Dod-Chr3 8741790 8742782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0702 37 211 AP2-EREBP Transcription Factor Family AT5G18560 47.273 1.92e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod03g0702 AP2 7.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0702 - - gmx:100793333 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2718 05 53329971 53331022 Dod03g0702 03 8741790 8742782 PCT