Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0701 ATGGAGCGGTTCGGACGGTCTAGTGAGGGTTCACGGTCTGATCCGTCGCCGGAGTGGACCGGAACCGGCGGCGAAACCGGCCTCGAAGAGCGTGTTTGGCAATTGGGGGTGGGTGGTTCTGCAGCAGAGGAATCGTATCCCCAAAGGCCCGATGAGGCTGATTGTATCTACTATTTGAGGACTGGCTTCTGTGGCTATGGCTCCCGCTGTCGCTTCAATCATCCCAAAGACCGTGCCGCGATTATTGGAGCTGCGAGGACTGGAGGGGAGTATCCGGAACGGATTGGCCAGCCTGTGTGCCAGTATTATATGAAGACGGGATCATGCAAATTCGGCCCATCCTGCAAGTACCACCATCCTAGGCAGACAGCAGGCACTGCTACCCCAGTGTCACTAAATTATTATGGATATCCATTGCGACTGGGTGAGAAAGAGTGTTCGTATTATGTGAAAACGGGGCTATGCAAGTTTGGTTCAACTTGTAAATTCCATCATCCTCAGCCTGCTGGCATCCAAGTTCCAACAGCATCACCGGTTCCTCCAGTTTCGCCTTTATCTGTACCTTCACCAATGTATCCAACCGTACAGACTCCATCTGGTCCTTCATCTCAACAGATTGGTGTACTGGTTGCAAGGCCACCTCTGCTGCCTGGTTCATTTGTTCAGAGCCCCTATGGCCATGTGGTGCTGTCCCCTGCAATGGTCCCGATTTCTGGATGGGGTCCGTATCCGGCTCCTGCAGCAAGCTCTGTACTTCCTTCTAATATTCCATCTAATGTTGGATCGGCACAGTTTTATGGGATAACCCATATACCTTCACCAGCAGCTGCCTTTACTGGACCTTATCAACTTTCTGGTTCCTCTGTTGGTCCTTCAAGTAGTAGTCAGAAAGAGCAGTCATTGCCGGAAAGGCCTGATCAGCCAGAATGTCAGTATTACTTGAAAACAGGAGAGTGTAAATTTGGTCCATCATGTAGGTACCACCATCCACCAGACATGAGTGCACCAAAAGGGAATGTGATCCTTAGTCCTGCTGGCCTTCCTCTACGCCCGGGGGCACCGCCTTGCACTCATTATGCACAGCGTGGAGTATGCAAGTTCGGTCCTGCATGCAAATTCGATCATCCTGTGGGATCATTGAGTTATAGTCCATCTGCTTCTTCCCTGGCTGACATGCCGGTTGCACCCTATCCTGTGGGTTCATCAATTGGTACACTTGCTCCGTCATCTTCATCATCAGAGTTGCGGCCTGAACTCACCTCAGGATCCAACAAGGAGTCTGCTTCATCCAGATTGCCTTCATCAATGAGCACATTGACTGGATCAGTTGGCTTGACTTTGTCAACTGGCAGACCCGTTTCCCAATCAAGCACTCAACCATCTGCTCAGAGTTCCAGTTCTCTAGCAGCTGCTGATACCGCCACAACCAGCAATGTCTCTCACGCGTCAAGCTAA 1455 0.5107 MERFGRSSEGSRSDPSPEWTGTGGETGLEERVWQLGVGGSAAEESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPKDRAAIIGAARTGGEYPERIGQPVCQYYMKTGSCKFGPSCKYHHPRQTAGTATPVSLNYYGYPLRLGEKECSYYVKTGLCKFGSTCKFHHPQPAGIQVPTASPVPPVSPLSVPSPMYPTVQTPSGPSSQQIGVLVARPPLLPGSFVQSPYGHVVLSPAMVPISGWGPYPAPAASSVLPSNIPSNVGSAQFYGITHIPSPAAAFTGPYQLSGSSVGPSSSSQKEQSLPERPDQPECQYYLKTGECKFGPSCRYHHPPDMSAPKGNVILSPAGLPLRPGAPPCTHYAQRGVCKFGPACKFDHPVGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELTSGSNKESASSRLPSSMSTLTGSVGLTLSTGRPVSQSSTQPSAQSSSSLAAADTATTSNVSHASS* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0701 484 PANTHER PROTEIN PHOSPHATASE RELATED 1 474 - -
Dod03g0701 484 SUPERFAMILY CCCH zinc finger 354 380 IPR036855 GO:0046872
Dod03g0701 484 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 474 - -
Dod03g0701 484 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Dod03g0701 484 SUPERFAMILY CCCH zinc finger 51 78 IPR036855 GO:0046872
Dod03g0701 484 MobiDBLite consensus disorder prediction 406 484 - -
Dod03g0701 484 SUPERFAMILY CCCH zinc finger 141 168 IPR036855 GO:0046872
Dod03g0701 484 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Dod03g0701 484 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Dod03g0701 484 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Dod03g0701 484 SMART c3hfinal6 94 121 IPR000571 GO:0046872
Dod03g0701 484 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Dod03g0701 484 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Dod03g0701 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 76 IPR000571 GO:0046872
Dod03g0701 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 353 376 IPR000571 GO:0046872
Dod03g0701 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Dod03g0701 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 167 IPR000571 GO:0046872
Dod03g0701 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 121 IPR000571 GO:0046872
Dod03g0701 484 Gene3D - 47 128 - -
Dod03g0701 484 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Dod03g0701 484 SUPERFAMILY CCCH zinc finger 97 122 IPR036855 GO:0046872
Dod03g0701 484 Gene3D - 293 379 - -
Dod03g0701 484 Gene3D - 129 174 - -
Dod03g0701 484 MobiDBLite consensus disorder prediction 286 308 - -
Dod03g0701 484 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Dod03g0701 484 MobiDBLite consensus disorder prediction 286 301 - -
Dod03g0701 484 ProSiteProfiles Zinc finger C3H1-type profile. 94 122 IPR000571 GO:0046872
Dod03g0701 484 SUPERFAMILY CCCH zinc finger 308 332 IPR036855 GO:0046872
Dod03g0701 484 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0701 Dod-Chr3 8726342 8734874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0701 1 452 C2H2 Transcription Factor Family AT5G18550 56.833 4.03e-159 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod03g0701 zf-CCCH 2.9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0701 - - gmx:100778426 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2717 05 53322699 53328242 Dod03g0701 03 8726342 8734874 PCT