Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0658 ATGGAGGATCCTACGCATCTGGAGAGAATGGGCAGAGAACTCAAGTGCCCCATTTGTTTGAGTTTGCTGAGTTCCGCAGTCTCCCTCACTTGCAACCACGTTTTCTGCAACTTGTGTATTGTAAAGTCCAGCAAGTCTTCTTCTGCTTGCCCCGTCTGCAAACTACCCTTCACCCGTCGAGAGGTTCGCCCTGCTCCTCACATGGACAACTTGGTCAACATCTACAAGAACATGGAATTGGCTTCCGGAATGAGTTTATTTCTCACCCAACACAATGTACCCCTTACCAAATTATCAGATGAAGAAACACAATGTGAAGGTGATGGTGGTTGTGGAAAAGAGGATGATGGTGGGATTCATCAAAATCATGCACAGAAAAGAAAACCCCTCAAAAGAACAAGGAAGAATACCATGACCAGCACGAAATGTCCAGGTCCTGACACCTCAAAACCTTCTTTTCCAGCAAAGAAAAGGGTTCAGGTGCCACAAAATCCTCTTTCAGAAACTCCACTAAAGAATTCAGGCTTTGGAGACTCTCCTAATGTAATTAACAAAGACGGAACAGAAAAGGATTCAGTTGTGGCAAATGAAAGGCCCCTCCAAAGTAAAAACAATGAACTTGTTCTTTCACCCTTCTTTTGGTTAAGAGAGGAGGAAGGTGGTGAAAAATTAACTCAGCAAAGCAATGGGGATCGACTTAGTGATGATGGCCCAACACCTATTCCTCCTTCATTCAGTGATCTAAAGGACTCTGATGATGAAAACCCTTCTAAAGTGACTTCATCTGATGAGGTGCAAAATAAAGCCTGTGTCGATTTATTTGATAGTGAGATGTTTGAATGGACACAAAGGCCTTGCTCCCCTGAATTATTTTCAAGTCCTGTCAAAATGCAGGTAATGAGGGAATTGGAGAGAAAGGCTTTGAATCCTGGTGAGATTGATGAAATTCAAGAGGATTTGGTGTCAGCTTCTCCAGAGCTTGAAAGAAATCTGTCAAGTGCTGATGCTGACAATACTAATTATCACAATCCTAAAGAAGCAAATAGATTGACTGATGTGCTACCACCAAGTATGACTTCTCAATTTAGGAGTTCCAATGATCCAAATGGGATAAAGAAGTCCATGAAGGTAGGTAGAAAGACTATGGAAAAAGCAAGGCAAGAACAGATTGTGGAACAAGGTCCAATTGATGGAATGAATGTTGATTTGAATAGAACATTAGAAGTCTCTAAGGATCAAACAGGGGATAAGAAAAAATCTTCTAATCTGGGGAAGACTAATAGAAGGGGCAAGAGGGTTTGTTTCAATACCACAATTCCAACAGCTCAACCTGCTTGTACAGTCTCCAATATATCAGGAATTCTTGGTAATGGTGAAATGAACATGGCAAATAATTCATACACTTCACATTGCAAACAAGAAACTGAGAAGTGTGCTCCCCATGATATTGCTGGAAAATGCCAGAGGAAAATATCTGGAAAGCAAAAGCTGGAACATGTGCAGGACCCATCTGAAGAACTATCATCAATGCAAAACCAAACCAATGGGTTTGCTGGTTCTATGTCATCCATTTTAAGTTTGGAGACAGATAATAATGGAAAAACCTCTAATATCAGGCAAAGAAAAGGCAAATTTTCCAGAAAAACTATTTCTTGCAGTGGACAATTAAGCAGTGCAAAGAGGTTGAAACTTTCCTCTGATTGTCTCTCTAAGGCTGAGGCTGGTGAAGAAATTCAGCCTAATGAAATTATTCAGAGAGGTACTGATGTTAAGGCTTTGAATGATACATCTAAAGAGAAATATAGTCCTTTGAAGGATGAACCAGTTTTACAGAAATGTGAAAGTCATGCCAAAAAGTATGAATGTGCCTTCTGTCTCTCATCAGAAGAATCAGAGGCTTCTGGCCCGATGATGCATTACTATGGTGGCAAGCCTGTAATTGCAGATTATGAAGGAGGATCCAAAGTCACACATTCTCACAGGAACTGCACTGAATGGGCCCCCAATGTATATTTTGAAGATAATAATGCGGTTAATCTTGAAGCTGAAATAAATAGAAGTCGGAGAATCAAATGTAGCTTTTGTGGACTTAGGGGTGCTGCACTTGGTTGTTATGAGAAAAGTTGTCGCAGGAGCTTTCATGTTCCTTGTGCCAAGTGGACTCCGCAATGTCGATGGGATATGGAAAACTTTGTCATGTTATGCCCGTTACATGGTTCGTCCAAGTTGCCCGGTGAAAGTTCAGGATCCCAGTATGGGAGTACCAAATGCACAGCTAGAGAGGGTAAAAGCCTTGCTTGCAAACATGGCACTGCAAATCAGAGTCGGACTGCTCATGGATTATTCAAGAAAGTTGTACTCTGTTGTTCAGCACTGTCTGTCCAGGAGAGGGATGTTGTTTCTGCATTTGAAAAAGCATCCAAAGTTACTGTTTTGAAAAAATGGGATTCAAGTGTCACCCATGTTATAGCATCAACACATGAAAATGGGGCATGCAGAAGGACCCTTAAAGTATTGTTGGGCATCCTGGAAGGAAAATGGATTCTCAATATTGAATGGATTAAAGCCTGCATGAAGGAAATGGAGCCTGTTGATGAAGAGCTCTATGAAATTAATGTTGACATCCACGGAATCAGGGATGGTCCTCGTCTTGGACGACTCAGAGTATCGAACAAGCAACCAAAGCTTTTCAATGGCTACAAGTTCTATTTTATGGGAGATTTTGTACCGTCATACAAGGGCTATCTGCAAGACCTTGTGACAGCTGCTGGAGGGGTAATTTTGAATAGAAAACCAATGTCTGGTGACCAAATAACAATGTCACCTGATATGCATCCATGTCAGACCCTCATAATTTACAGTCTTGAGCTTCCTGATAAATGCACTCCTTTGAAAAGGGATACTATTTTCAATCAAAGGCGATGTAATGCAGAGGTTCTGGCAAGCTCTACAGGTTCAAAAGTGGCAAGCAATACATGGATTCTGAACTCGATTGCAGCCTGCAAACTTCAAAGCCTTGATCAATAA 3027 0.413 MEDPTHLERMGRELKCPICLSLLSSAVSLTCNHVFCNLCIVKSSKSSSACPVCKLPFTRREVRPAPHMDNLVNIYKNMELASGMSLFLTQHNVPLTKLSDEETQCEGDGGCGKEDDGGIHQNHAQKRKPLKRTRKNTMTSTKCPGPDTSKPSFPAKKRVQVPQNPLSETPLKNSGFGDSPNVINKDGTEKDSVVANERPLQSKNNELVLSPFFWLREEEGGEKLTQQSNGDRLSDDGPTPIPPSFSDLKDSDDENPSKVTSSDEVQNKACVDLFDSEMFEWTQRPCSPELFSSPVKMQVMRELERKALNPGEIDEIQEDLVSASPELERNLSSADADNTNYHNPKEANRLTDVLPPSMTSQFRSSNDPNGIKKSMKVGRKTMEKARQEQIVEQGPIDGMNVDLNRTLEVSKDQTGDKKKSSNLGKTNRRGKRVCFNTTIPTAQPACTVSNISGILGNGEMNMANNSYTSHCKQETEKCAPHDIAGKCQRKISGKQKLEHVQDPSEELSSMQNQTNGFAGSMSSILSLETDNNGKTSNIRQRKGKFSRKTISCSGQLSSAKRLKLSSDCLSKAEAGEEIQPNEIIQRGTDVKALNDTSKEKYSPLKDEPVLQKCESHAKKYECAFCLSSEESEASGPMMHYYGGKPVIADYEGGSKVTHSHRNCTEWAPNVYFEDNNAVNLEAEINRSRRIKCSFCGLRGAALGCYEKSCRRSFHVPCAKWTPQCRWDMENFVMLCPLHGSSKLPGESSGSQYGSTKCTAREGKSLACKHGTANQSRTAHGLFKKVVLCCSALSVQERDVVSAFEKASKVTVLKKWDSSVTHVIASTHENGACRRTLKVLLGILEGKWILNIEWIKACMKEMEPVDEELYEINVDIHGIRDGPRLGRLRVSNKQPKLFNGYKFYFMGDFVPSYKGYLQDLVTAAGGVILNRKPMSGDQITMSPDMHPCQTLIIYSLELPDKCTPLKRDTIFNQRRCNAEVLASSTGSKVASNTWILNSIAACKLQSLDQ* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0658 1008 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 83 IPR013083 -
Dod03g0658 1008 SUPERFAMILY BRCT domain 896 1007 IPR036420 -
Dod03g0658 1008 MobiDBLite consensus disorder prediction 221 264 - -
Dod03g0658 1008 MobiDBLite consensus disorder prediction 104 123 - -
Dod03g0658 1008 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 4 1007 IPR031099 GO:0006281|GO:0006974
Dod03g0658 1008 CDD BRCT_Bard1_rpt1 785 864 - -
Dod03g0658 1008 Coils Coil 1002 1008 - -
Dod03g0658 1008 MobiDBLite consensus disorder prediction 162 181 - -
Dod03g0658 1008 Pfam BRCA1 C Terminus (BRCT) domain 780 858 IPR001357 -
Dod03g0658 1008 ProSiteProfiles Extended PHD (ePHD) domain profile. 619 739 IPR034732 -
Dod03g0658 1008 Gene3D BRCT domain 893 1001 IPR036420 -
Dod03g0658 1008 MobiDBLite consensus disorder prediction 104 189 - -
Dod03g0658 1008 ProSiteProfiles Zinc finger RING-type profile. 16 54 IPR001841 -
Dod03g0658 1008 SMART ring_2 692 738 IPR001841 -
Dod03g0658 1008 SMART ring_2 16 53 IPR001841 -
Dod03g0658 1008 MobiDBLite consensus disorder prediction 407 429 - -
Dod03g0658 1008 SMART PHD_3 691 739 IPR001965 -
Dod03g0658 1008 SMART BRCT_7 779 861 IPR001357 -
Dod03g0658 1008 SMART BRCT_7 894 1001 IPR001357 -
Dod03g0658 1008 Pfam Zinc finger, C3HC4 type (RING finger) 15 53 - -
Dod03g0658 1008 SUPERFAMILY RING/U-box 6 77 - -
Dod03g0658 1008 Gene3D BRCT domain 782 887 IPR036420 -
Dod03g0658 1008 MobiDBLite consensus disorder prediction 409 423 - -
Dod03g0658 1008 Pfam PHD-like zinc-binding domain 660 738 - -
Dod03g0658 1008 ProSiteProfiles BRCT domain profile. 892 1008 IPR001357 -
Dod03g0658 1008 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN 4 1007 - -
Dod03g0658 1008 ProSitePatterns Zinc finger RING-type signature. 31 40 IPR017907 -
Dod03g0658 1008 SUPERFAMILY BRCT domain 781 872 IPR036420 -
Dod03g0658 1008 ProSiteProfiles BRCT domain profile. 777 871 IPR001357 -
Dod03g0658 1008 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 616 741 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0658 Dod-Chr3 8090967 8096483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0658 9 90 RAD5 or RAD16-like Gene Family AT5G22750 32.941 1.90e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0658 K10683 - gmx:100804958 1300.42