Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0644 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCACCCCAGGAAGGGGAAAAGCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGACCTCTTGTTTCTTTACCTGCAGTTGGAAGTCGCGTGGTATACTTTCCACAAGGTCACAGTGAACAGGTGGCTGTGTCAACCAACAAGGAAGTGGATGCACATATCCCGAACTATCCGAGCTTGCCGCCCCAACTCATTTGTCAACTTCATAATCTGACTATGCATGCTGATGCTGAGACTGATGAAGTGTATGCACAAATGACCTTGCAACCTTTGAATCCTCAAGAGCAAAAGGAGGCATACCTTCCAGCAGAGTTGGGCACTCCGAGTAAACAGCCAACAAACTATTTCTGCAAAACTTTGACTGCCAGTGACACGAGCACGCATGGGGGATTCTCTGTTCCTCGCCGGGCAGCTGAAAAAGTGTTCCCTCCATTGGACTTCTCCCAACAGCCTCCTGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTTCGGGGCCAGCCTAAAAGGCATCTACTTACAACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTCATTGCTGGTGATTCCGTGCTGTTTATCTGGCAAGTAATTTTATTGAATGAAAAGAACCAATTGCTTCTTGGCATCCGGCGTGCTAATCGACCACAAACTGTGATGCCTTCCTCAGTGTTGTCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCAACAAATAGTCGATTCACCATTTTCTATAATCCACGTGCTAGCCCGTCAGAATTTGTCATACCCTTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGCTGTTTGAAACTGAGGAATCTAGTGTGAGGCGATACATGGGTACAATAACTGGCATTAGTGACTTGGATCCTGCCCGGTGGCCAAATTCACATTGGCGCTCAGTCAAGGTTGGCTGGGACGAATCCACTGCTGGAGAGAGGCAACCTAGAGTGTCTCTGTGGGAAATCGAGCCATTAACAACGTTTCCTATGTATCCATCCCCATTTCCCCTTAGGCTCAAACGACCTTGGCCTCCTGGACTGCCTTCATTCCATGGAATGAAGGATGATGACTTTGGCATAAATTCTCCACTGATGTGGCTTCGAGACACTGATAGAGGGCTTCAGTCTCTTAATTTTCAGGGGATTGGAGTTAGTCCTTGGATGCAGCCAAGGTTTGATCCCTTGCTGAACATGCAAACAGATATGTATCAAGCTGTGGCTGCTGCTGCTTTTCAGGATATGAGGACTTTAGATCCTTCCAAGCCGCATCCTGCTTCCTTACTTCAGTTTCAGCAACCACAGAACTTCCCAAACAGGACTGCAGCTTTAATGCATTCCCCGATGCTGCAGCAACCTCAGCAGGCTTTTCAAAGTAATCAAGAGAATCAGCATCCTCCTCAATCTCAGTCACAAACTCAGATGCATCTTCAGCAGCAACTACAGCATCAGAACTCGTTCAATAGTCAGCATCATCATCCCAACCAGCAACTACAACAGCAAACACAACAGCAATCACAGCAACTGGTAGATAATCCGCAGATTTCCAGTGCTGTCTCTACGATGTCTCAGTTTGTTTCAGCACCTCAACCTCAATCACCACCAATGCAAGCTATCTCTTCACTGTGTCAACAGCAAAGTTTTTCTGATTCAAATGGAAACCCTGTGACCACTGCTAATGTTTCTTCCTTGCACAGTATATTGGGTTCATTTCCCCAGGATGAGACATCTCACCTTCTGAACCTTCCTAGAACTAGCTCTTGGGTTCCTGTTCAAACTTCAGCTGCATGGCCCTCTAAGCGAGTTGCAGTGAATCCCCTCCTTTCTTCTGGGGCATCTCAGTGCATTCTGCCTCAGGTGCAGCAGTTAGGGCAGCCACAGAGTACCATGTCTCAAAATGCTATTACATTGCCACCCTTTCCTGGTAGGGAGTGCTCAATAGACCAAGAAGGAAGTACTGATCCACAAAACCATCTTTTATTTGGTGTTAATATAGAACCTTCATCTCTTCTAGTGCATAATGGGGTGTCAAACCTCAAGGGGGCTTCCTGCCGACAGCAGAAAATGCAGGGGCAAGGAAACCTAACAAACAAAACCTTTGTTAAGGTTTATAAATCAGGGTCCTTTGGAAGATCACTTGATATCACTAAATTTAGCAGCTACCATGAGCTGCGCAGTGAGCTTGCTCGCATGTTTAGCCTTGAAGGCGAGCTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAATGATGTTCTCCTCCTCGGTGATGGCCCCTGGCCGGAATTCGTAAATAGTGTATGGTGCATCAAGATACTTTCACCTCAGGAAGTGCAGCAGCAGATGGGCAACTCTGGCCTCGAGCTCTTGAACTCAGTTCCAGTTCAAAGGCTCTCTAATGGCATTTGCGACGACTACATGAGCCATCAAGACCCAAGAAGTTTGAGCTCTGGGATAACAACTGTGGGGTCTTTAGACTACTGA 2613 0.4677 MRLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFIWQVILLNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDFGINSPLMWLRDTDRGLQSLNFQGIGVSPWMQPRFDPLLNMQTDMYQAVAAAAFQDMRTLDPSKPHPASLLQFQQPQNFPNRTAALMHSPMLQQPQQAFQSNQENQHPPQSQSQTQMHLQQQLQHQNSFNSQHHHPNQQLQQQTQQQSQQLVDNPQISSAVSTMSQFVSAPQPQSPPMQAISSLCQQQSFSDSNGNPVTTANVSSLHSILGSFPQDETSHLLNLPRTSSWVPVQTSAAWPSKRVAVNPLLSSGASQCILPQVQQLGQPQSTMSQNAITLPPFPGRECSIDQEGSTDPQNHLLFGVNIEPSSLLVHNGVSNLKGASCRQQKMQGQGNLTNKTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFSLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQQMGNSGLELLNSVPVQRLSNGICDDYMSHQDPRSLSSGITTVGSLDY* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0644 870 Pfam Auxin response factor 258 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod03g0644 870 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 729 850 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod03g0644 870 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 722 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod03g0644 870 SMART B3_2 127 234 IPR003340 GO:0003677
Dod03g0644 870 MobiDBLite consensus disorder prediction 491 594 - -
Dod03g0644 870 SUPERFAMILY DNA-binding pseudobarrel domain 112 261 IPR015300 -
Dod03g0644 870 PANTHER AUXIN RESPONSE FACTOR 729 850 - -
Dod03g0644 870 SUPERFAMILY CAD & PB1 domains 732 811 - -
Dod03g0644 870 PANTHER AUXIN RESPONSE FACTOR 1 722 - -
Dod03g0644 870 Gene3D - 296 368 - -
Dod03g0644 870 Pfam AUX/IAA family 723 820 IPR033389 -
Dod03g0644 870 Pfam B3 DNA binding domain 127 233 IPR003340 GO:0003677
Dod03g0644 870 CDD B3_DNA 126 232 IPR003340 GO:0003677
Dod03g0644 870 Gene3D - 732 825 - -
Dod03g0644 870 Gene3D - 125 233 IPR015300 -
Dod03g0644 870 ProSiteProfiles B3 DNA-binding domain profile. 127 234 IPR003340 GO:0003677
Dod03g0644 870 ProSiteProfiles PB1 domain profile. 736 820 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0644 Dod-Chr3 7959333 7965744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0644 1 492 B3 DNA Binding Superfamily AT1G30330 85.743 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod03g0644 AUX_IAA 5.8e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0644 - - gmx:100798719 1469.14