Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0614 ATGATGGTTGAAAGGTGGTTTTATCACTTTATAAATGCCCCATCTCTTTGCCCACTTTGCTTTCATTTTCTGACATATCTCCTTCATAACTGTTCTGCCATGGCTTTTCCAAACCAATCCATGTCAGTTTCTCCACAGAGAAAGATGGGAAGGGGAAAGATTGAGATCAAGCGGATTGAGAACACCACCAATCGCCAAGTGACTTTCTGCAAGCGCAGGAATGGTCTTCTGAAGAAGGCATATGAGTTATCTGTTCTGTGTGATGCTGAGGTTGCTCTAATAGTCTTCTCTAGCCGTGGCCGCCTCTATGAATATGCTAATAACAGTGTCAAAGCAACTATTGAGAGGTACAAGAAAGCTTGTTCAGATTCGTCTGGTGCTGGATCTGCTTCCGAGGCTAATGCTCAGTTTTATCAGCAAGAAGCAGACAAATTACGGGTGCAAATTAGTAACCTGCAGAATAACAACAGGCAAATGATGGGTGAGTCTTTGAGTTCTATGAATGCCAAGGACCTCAAATCCCTGGAGACTAAATTAGAAAAAGGAATAAGCAGGATTCGTTCCAAAAAGAATGAGCTGCTGTTTGCTGAAATTGAGTACATGCAAAAGAGGGAGATAGACTTGCACAACAACAACCAGCTTCTTCGAGCAAAGATAGCTGAAAGTGAGAGGAACCACCATAACATGAACGTGTTGCCTGCTGGAGGCACAAACTATGACTCTATGCAGTCTCAGCAGCAGCAGTTTGACTCTCGTGGCTACTTCCAAGTCACTGGATTACAGCCCAATAACCAGTACGCACGGCAAGACCAGATGTCCCTTCAATTAGTTTGA 834 0.4365 MMVERWFYHFINAPSLCPLCFHFLTYLLHNCSAMAFPNQSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSGAGSASEANAQFYQQEADKLRVQISNLQNNNRQMMGESLSSMNAKDLKSLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNHHNMNVLPAGGTNYDSMQSQQQQFDSRGYFQVTGLQPNNQYARQDQMSLQLV* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0614 277 ProSiteProfiles MADS-box domain profile. 49 109 IPR002100 GO:0003677|GO:0046983
Dod03g0614 277 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 58 105 IPR002100 GO:0003677|GO:0046983
Dod03g0614 277 Pfam K-box region 133 219 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod03g0614 277 SUPERFAMILY SRF-like 50 121 IPR036879 GO:0003677|GO:0046983
Dod03g0614 277 PANTHER AGAMOUSB 43 271 - -
Dod03g0614 277 SMART madsneu2 49 108 IPR002100 GO:0003677|GO:0046983
Dod03g0614 277 ProSiteProfiles K-box domain profile. 135 225 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod03g0614 277 ProSitePatterns MADS-box domain signature. 51 105 IPR002100 GO:0003677|GO:0046983
Dod03g0614 277 CDD MADS_MEF2_like 50 119 IPR033896 GO:0000977|GO:0045944
Dod03g0614 277 PANTHER MADS BOX PROTEIN 43 271 - -
Dod03g0614 277 Coils Coil 135 162 - -
Dod03g0614 277 Coils Coil 172 192 - -
Dod03g0614 277 PRINTS MADS domain signature 86 107 IPR002100 GO:0003677|GO:0046983
Dod03g0614 277 PRINTS MADS domain signature 71 86 IPR002100 GO:0003677|GO:0046983
Dod03g0614 277 PRINTS MADS domain signature 51 71 IPR002100 GO:0003677|GO:0046983
Dod03g0614 277 Gene3D - 61 127 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0614 Dod-Chr3 7523819 7533550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0614 47 277 MADS-box Gene Family AT3G58780 66.949 2.44e-105 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod03g0614 K-box 2.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0614 K09264 - gmx:732595 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0614 03 7523819 7533550 Dod03g0614 03 7523819 7533550 ECH
Dod04g2217 04 46040741 46046470 Dod03g0614 03 7523819 7533550 PCT