Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0589 ATGGATGAGGTTCAGGGCAGTTCCAGTACTTTGCCTCCTTTTCTCACAAAGACTTATGAGATGGTGGATGAGCCTTCCACCAATTCCATTGTTTCATGGAGTGCCACCGACAAGAGTTTCACTGTTTGGAACCCACCAGAGTTTGCAAGGGACTTGTTACCCAGGTTCTTTAAGCACAATAACTTCTCAAGTTTTATCAGACAGCTCAACACTTATGGCTTTAGGAAGGTTGATCCAGAACAATGGGAATTTGCTAATGACGATTTTGTAAGAGGTCAACCACATCTCTTGAAGAATATCCATAGGCGCAAACCAGTTCATAGTCATTCTTTGCAGAATCTACAAGGACAAGTGGCTACTCCTCTAACTGAGTCAGAACGGCAGAGTCTGAAAGACAAGATCGAGAAGCTGAACCATGATAAACAACAACTTCTTTTGAAGTTGCAGCAACAAGAACAGGAGTGGCAAATGTTTGAGATAGAAGTAGATATCTCAAAGGATCGTTTGGAAAAGTTGGAGAAAAAGCAACAAATTATGCTCTCTTCAGTTTCTCAAGTGCTGCATAAACCAGAGGTTGCCTTAAATCAATTGAAACTGACAGAGAACACGGATAGAAAACGAAGGTTGCGAAAAGGTGGTCGTTTTAGTGATGAAGCTAGCATTGAAGACCCTATGGAAACTCCCCAGGTGTTATCTAGGGAAAGTGAGGAGACTAAAACTATTTTCACACCAAGCATAGACCGATTGAGTCAGCTCGAGGCATCGCTAGTGTTTTGGGAAAATATTGCACAAGATGTGAATGAAACCCTTGTTCAAAGTCATTCAAACTTGGACTTTGATGAATCTCTGAGTTGTGCAGATAGTCCAGCAATATCTTGTGTGCAACTTGACGTTGAAGTTCAGCCTAAGTCATCTGGAATCGACATGAACTCTGAGCCAGCTGTACCTGCTGGTCCTGATCTTGTTGCTTCACAAGAACAACCTATGGGTACAAACCCTGTGGCTACTGGTGTTAATGACAGATTCTGGGAACAATTCTTGACAGAGAATCCTGGTTCGACAGAAATGCAGGAGGCACAGTCAGAAAGAAAGGATTCTGATGGCAGAAAGAATGAAGGAAAACCTAGTGACCATGGCAAATTTTGGTGGAACATGAGGAATGTAAATGACCTTCCAGAACAGATGGGGCATTCTTAG 1197 0.4244 MDEVQGSSSTLPPFLTKTYEMVDEPSTNSIVSWSATDKSFTVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFVRGQPHLLKNIHRRKPVHSHSLQNLQGQVATPLTESERQSLKDKIEKLNHDKQQLLLKLQQQEQEWQMFEIEVDISKDRLEKLEKKQQIMLSSVSQVLHKPEVALNQLKLTENTDRKRRLRKGGRFSDEASIEDPMETPQVLSRESEETKTIFTPSIDRLSQLEASLVFWENIAQDVNETLVQSHSNLDFDESLSCADSPAISCVQLDVEVQPKSSGIDMNSEPAVPAGPDLVASQEQPMGTNPVATGVNDRFWEQFLTENPGSTEMQEAQSERKDSDGRKNEGKPSDHGKFWWNMRNVNDLPEQMGHS* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0589 398 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
Dod03g0589 398 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod03g0589 398 Coils Coil 127 154 - -
Dod03g0589 398 Gene3D - 6 104 IPR036388 -
Dod03g0589 398 MobiDBLite consensus disorder prediction 345 398 - -
Dod03g0589 398 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod03g0589 398 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod03g0589 398 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod03g0589 398 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 385 - -
Dod03g0589 398 MobiDBLite consensus disorder prediction 358 379 - -
Dod03g0589 398 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod03g0589 398 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 385 IPR027725 -
Dod03g0589 398 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0589 Dod-Chr3 7115171 7116780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0589 7 397 HSF AT4G18880 53.616 1.13e-123 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dod03g0589 HSF_DNA-bind 1.4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0589 K09419 - gmx:100820566 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0589 03 7115171 7116780 Dod03g0589 03 7115171 7116780 ECH
Dod04g2191 04 45498852 45500179 Dod03g0589 03 7115171 7116780 PCT