Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0587 ATGGCTTCAGGGGCTATATTCTCGTCTCTGCGGCGGAGAAGGTCTCCGTCGCTGGAGGCGTTCCTCGCCTCCGTTGACTTGACCGACGTGGCGCTCGTCCAAACCCTCGCTCACGTGGCCAGCGAGCTAGTCACGTGCTTCTCCGATTCATCTTTCTTCTTCCAGCGCAAGAATTCGAGGTCCCTGATCCGAAAAGTTGAGGTCTTTCAGCTGCTACTGGAGTACCTTAGCGATTCCTCCTCCTCCTCCTCCTCAGGCGCGTGTCTTCCACCCACCGCGGTGCTCTGCCTCAAGGAGCTTTACCTCTTTCTCTACCGTTCCAAGATTCTCCTTGATTACTGTGCCCAATCGGGTAAGTTGTGGCTCTTGCTTCAGAACCATTCGATTTCAGGGCATTTCCATGATTTGAACCAAGAGATTTCGACCCTTTTGGATGTTTTCCCTATTCGGGATGTTGTGTTCAGTAAGGATGTCAGGGAACAGGTTGAGCTCTTGCAGAAGCAGTCAAGGAAGGCTAGGTTGTTTATAGATAAGAATGATGATGCTCTTAGGATAAGGTTCTTTGCTTTCCTTGATATGTTTGAGAGTGGGATGATTCCTGATTCTGCTGAATTGAGGGACTTCTATGTGGAGAAGTTGCAGATTTTGGATGCTAGGAGTTGTAGGAGTGAGATTGAGACCTTGGAGGAGCAGATTGTTAATCATGAGGGGGACATTGAGCCGACGATTTCTGTGCTCAATGGGTTCGTCGCGATGACTCGGTATTGCAGGTTTTTGCTCTTTGGGTTTGAGGACGATGAGCTTAGCCTGGAGCGTGGGAATCAGAAGAAGCTCAAGACGAGGTTGATTACTCAGGAAATTGCAGAAACGTTTATGACTGTACCGAAGGACTTTTGCTGCCCCATATCGTTGGATTTGATGCGTGACCCGGTGATAATTTCCACTGGGCAGACCTATGACAGGAGTTCAATTTCCAGATGGATGGACGAAGGGCACACGACTTGCCCGAAGACAGGGCAAATGCTTGCCCACAATCGCCTTGTTCCGAACCGAGCTCTGAGGAATTTAATGGTGCAGTGGTGCTCTGCACATGGAATTCCCCTTGAACCACCAGAGGTTATGGATCCAATGGCTGAACCTTTTGCATCAACTTGTCCCTCCAATGCTTCCCTTGAAGCCAACAGAGCCACTGCAACGCTTCTCATTCAGCAGCTTGCCGACGGGTCGCAAGCTGGAAAGACTGTAGCTGCTCGGGAGATACGATTGCTAGCAAAAACCGGAAAGGAAAATCGTGCTTTCATTGCAGAAGCAGGGGCAATTCCTTATCTTCGCAACCTACTTTCATCTCCCAATGCTGTTGCTCAGGAGAATTCCGTAACTGCATTGCTCAACCTATCCATTTTTGACAAGAACAAAAGCCGGATCATGGATGAGGAAGGGTGTCTTGGATCAATTGTTGATGTGCTTAGATTTGGCTACACAACAGAAGCAAGGGAAAATGCTGCGGCAACATTGTTTAGCCTGTCTGCGGTCCATGACTATAAGAAGAGGATTGCAGATAAGACAGGAGCTGTTGAAGCCCTGGCAGGGCTGTTGCAAGAGGGGACTCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTGTTTAATCTTTCCACTCACACCGAGAATTGTGCTAGGATGATAGAGGCAGGGGCAGTAACAGCTCTGGTTGGTGCTTTGGGGAATGAAGGAGTTGCTGAGGAAGCAGCAGGTGCCCTGGCCTTGATTGTTCGCCAGCCAATTGGGGCCAAAGCAGTGGTGAAGGAGGACGAAGCAGTTGCTGGATTGATAGGAATGATGCGTTGTGGAACACCGAGAGGTAAAGAGAATGCAGTTGCAGCACTGCTGGAGCTGTGCCGGAGTGGCGGCATGGCTGCAACTGAAAGGGTGGTTAAGGCGCCGGCTTTGGCTGGACTACTTCAAACCCTTCTTTTTACTGGGACAAAGCGAGCAAGACGAAAAGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAGCTCTACATTATGGTGGATTAGGTGTAGGCTATGCGTTTGCTAGCAATTCAGCTCCAACTAGGGATACAAGCTTTGCTGGTGATGTTTCAGTACAAATGTCCATTTCTGTCCCCGTTTTATAG 2160 0.4931 MASGAIFSSLRRRRSPSLEAFLASVDLTDVALVQTLAHVASELVTCFSDSSFFFQRKNSRSLIRKVEVFQLLLEYLSDSSSSSSSGACLPPTAVLCLKELYLFLYRSKILLDYCAQSGKLWLLLQNHSISGHFHDLNQEISTLLDVFPIRDVVFSKDVREQVELLQKQSRKARLFIDKNDDALRIRFFAFLDMFESGMIPDSAELRDFYVEKLQILDARSCRSEIETLEEQIVNHEGDIEPTISVLNGFVAMTRYCRFLLFGFEDDELSLERGNQKKLKTRLITQEIAETFMTVPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMDEGHTTCPKTGQMLAHNRLVPNRALRNLMVQWCSAHGIPLEPPEVMDPMAEPFASTCPSNASLEANRATATLLIQQLADGSQAGKTVAAREIRLLAKTGKENRAFIAEAGAIPYLRNLLSSPNAVAQENSVTALLNLSIFDKNKSRIMDEEGCLGSIVDVLRFGYTTEARENAAATLFSLSAVHDYKKRIADKTGAVEALAGLLQEGTPRGKKDAVTALFNLSTHTENCARMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPIGAKAVVKEDEAVAGLIGMMRCGTPRGKENAVAALLELCRSGGMAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEALHYGGLGVGYAFASNSAPTRDTSFAGDVSVQMSISVPVL* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0587 719 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 699 - -
Dod03g0587 719 SMART Ubox_2 297 360 IPR003613 GO:0004842|GO:0016567
Dod03g0587 719 Coils Coil 218 238 - -
Dod03g0587 719 Pfam U-box domain 294 364 IPR003613 GO:0004842|GO:0016567
Dod03g0587 719 CDD RING-Ubox_PUB 298 340 IPR045210 -
Dod03g0587 719 Pfam Armadillo/beta-catenin-like repeat 428 466 IPR000225 GO:0005515
Dod03g0587 719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 367 IPR013083 -
Dod03g0587 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 523 565 IPR000225 GO:0005515
Dod03g0587 719 SMART arm_5 512 552 IPR000225 GO:0005515
Dod03g0587 719 SMART arm_5 592 633 IPR000225 GO:0005515
Dod03g0587 719 SMART arm_5 553 591 IPR000225 GO:0005515
Dod03g0587 719 SMART arm_5 427 467 IPR000225 GO:0005515
Dod03g0587 719 SUPERFAMILY RING/U-box 282 367 - -
Dod03g0587 719 ProSiteProfiles U-box domain profile. 293 367 IPR003613 GO:0004842|GO:0016567
Dod03g0587 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 438 480 IPR000225 GO:0005515
Dod03g0587 719 SUPERFAMILY ARM repeat 399 675 IPR016024 -
Dod03g0587 719 PANTHER U BOX DOMAIN-CONTAINING 11 699 - -
Dod03g0587 719 Gene3D - 397 673 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0587 Dod-Chr3 7085663 7088172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0587 1 719 U-box Gene Family AT1G29340 69.986 0.0 943
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0587 - - gmx:100811153 1168.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0587 03 7085663 7088172 Dod03g0587 03 7085663 7088172 ECH
Dod04g2187 04 45478626 45479816 Dod03g0587 03 7085663 7088172 PCT