Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0582 ATGAAGGAGAGAAATGTCCATAAGATGCCTGGTTATAGTAGGCTTGAAAAGCCAGGTGAGATTCCTGAAGGGAGGAAAGCTAAAGAAGAGATCCACATGGCGGTGGATTGTACACTTGGCTACGGCAAAAAACAGAAAATGGACCACCACTCCTCCAGTCCACCGCTTCCCTCAACGCCGCCGGCCTCGCCTCCTTCCAAGCCACTGACTCGATTCGTTCTTTGCTTTGTTCCTATTCACTGCTCTTCCCACTTCTCTACTCTTACTCTTCTCCGCCGCTGCGACTCGGTCACCAACCCCAACATGTTCGGTCTGCGCTCTGCTTCTAATGTTGCTCACCGCCTTCATCAAAACTTGTCCCTTTGGGGTGTGCGTGTACAAAATATAAACATTGGAGGTGGCGTTGGAGGGGAGATCCCGGACAACAAGCGCCTTGAGTATGCTCTTCAGCATATCCATGGCATTGGCCGTTCCAAAGCTCACCACATCGTGTGTGAGCTTGGTGTTGAGAACAAGTTTGTCAAGGACCTAAGCAAAAGAGAATTGTATTCCATCCGTGAATTGCTCTCCAAGTACTTGATTGGGAATGATTTGAAAAAATGTGTTGAGAGAGATGTGGGGAGATTGGTGAGCATTCAGTGCTACAGAGGGATCAGGCACGTCGATGGCTTGCCCTGTCGAGGGCAGCGGACTCATACCAATGCTCGCACCAGGAAGAGCAGGCCTACTTTCAGGGGAACAAGATGA 747 0.5007 MKERNVHKMPGYSRLEKPGEIPEGRKAKEEIHMAVDCTLGYGKKQKMDHHSSSPPLPSTPPASPPSKPLTRFVLCFVPIHCSSHFSTLTLLRRCDSVTNPNMFGLRSASNVAHRLHQNLSLWGVRVQNINIGGGVGGEIPDNKRLEYALQHIHGIGRSKAHHIVCELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVSIQCYRGIRHVDGLPCRGQRTHTNARTRKSRPTFRGTR* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0582 248 PANTHER SMALL RIBOSOMAL SUBUNIT PROTEIN S13, MITOCHONDRIAL 109 243 - -
Dod03g0582 248 MobiDBLite consensus disorder prediction 42 64 - -
Dod03g0582 248 ProSitePatterns Ribosomal protein S13 signature. 216 229 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod03g0582 248 MobiDBLite consensus disorder prediction 228 248 - -
Dod03g0582 248 Hamap 30S ribosomal protein S13 [rpsM]. 123 247 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod03g0582 248 MobiDBLite consensus disorder prediction 1 28 - -
Dod03g0582 248 SUPERFAMILY S13-like H2TH domain 136 240 IPR010979 GO:0003676
Dod03g0582 248 Pfam Ribosomal protein S13/S18 136 237 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod03g0582 248 ProSiteProfiles Ribosomal protein S13 family profile. 135 240 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod03g0582 248 Gene3D 30s ribosomal protein s13, domain 2 202 244 IPR027437 -
Dod03g0582 248 MobiDBLite consensus disorder prediction 232 248 - -
Dod03g0582 248 Gene3D - 135 200 - -
Dod03g0582 248 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 109 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0582 Dod-Chr3 7002910 7005348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0582 124 240 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 28.369 3.84e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0582 K02952 - gmx:100527465 240.35