Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0563 ATGGCATCGGAGAAGAAGTTGTCGAACCCAATGAGGGAAATAAAAGTGCAGAAACTGGTGCTCAACATCTCCGTCGGCGAAAGCGGCGATCGTCTCACCAGAGCCGCCAAGGTCTTGGAGCAATTGAGTGGCCAAACCCCTGTCTTCTCTAAGGCTAGGTACACTGTGCGTTCTTTCGGAATCAGGCGTAACGAAAAGATCGCTTGCTATGTGACCGTGAGGGGGGACAAGGCCATGCAGCTCCTCGAGAGTGGGTTGAAGGTCAAGGAGTATGAACTCCTCAGGAGGAACTTCAGTGACACTGGCTGTTTCGGTTTTGGTATTCAGGAGCACATTGATCTCGGAATCAAGTATGATCCTTCTACTGGTATCTATGGTATGGATTTCTTTGTTGTTTTGGAGCGCCCTGGATACCGTGTTGGTAGGCGCAGAAGATGCAAGTCCCGTGTTGGGATTCAGCACAGGGTCACCAAGGAGGATGCAATGAAGTGGTTTCAAGTTAAGTATGAAGGAGTTATCCTCAACAAGGCCCAGCAAATTGTATCTTAG 549 0.4936 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQQIVS* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0563 182 PANTHER 60S RIBOSOMAL PROTEIN L11-1 1 181 - -
Dod03g0563 182 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 172 IPR002132 GO:0003735|GO:0005840|GO:0006412
Dod03g0563 182 Pfam Ribosomal protein L5 9 62 IPR031310 -
Dod03g0563 182 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
Dod03g0563 182 Gene3D - 2 177 IPR022803 -
Dod03g0563 182 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 1 181 IPR002132 GO:0003735|GO:0005840|GO:0006412
Dod03g0563 182 SUPERFAMILY RL5-like 8 173 IPR022803 -
Dod03g0563 182 Pfam ribosomal L5P family C-terminus 66 164 IPR031309 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0563 Dod-Chr3 6745797 6747197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0563 1 181 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 94.475 6.51e-129 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0563 K02868 - gmx:100499863 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0563 03 6745797 6747197 Dod03g0563 03 6745797 6747197 ECH