Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0561 ATGCCAGGTGACATTGGAAACTTGACTAAGCTTCAATTTTTGTATCTTTCTGAGAACAACTTGGAAGGTTCAATTCCCAGCGAGATTAGCTATCTTGATCAACTTGGGTTTCTTACAATGGGATTTAACAAATTGAGTGGGCCTATTCCGTCAAAACTTTTCAACATATCAACATTGAAGTTCTTGTATCTTTCATACAATTCTCTCTCAGATGATTCTCATGAACCTAACTTCCTTACTTCCTTGACAAGTTCTGGACGTTTGACACGTATAGTAGTATCAAACAATCCTTTAAAGGCAAGTCTTCCCAGCTCAATTGGGAACTTGTCCAAGTCCCTACAACATTTTCAAGCTGATTATTGCAGAGTTGGTGGCACTATTCCATTGGAAATCGGAAACTTAAGCAACTTGATGGGTTTATCTTTACATGGGAATGATATAAGAGGATCAGTTCCTGCTACAATTAAAAGTTTACAGAATCTTCAGTCTTTGGATCTTGGCTACAATGGACTTCAAGGGTCCGTTGTTGATGAGCTTTGTGAAATTCGAAAAATAAGTGATTTGTATCTAAATAACAATAAGCTTTCTGGAGTGATACCAACATGCTTAGGAAATATGTCTTCTCTTAGAAAGCTTTACTTGGGGTCTAACATGTTGACCTCTGAGATACCTCCTTCTTTCTGGACTCTCAAAGATATCATAAAGGTAGACTTATCCTCCAATGCTTTAGTTGGAAAGCTTCCACCTGAGATAGGGAAACAGAGAGCTCTTATTCTGTTGAATTTGTCAAGAAATGAGATTTCAGGCAACATTCCTACAACCATCAGTTTCTTGAAGACAATGCAAGATCTCTCCTTAGCAAGTAACAAATTGGAAGGGTCTATTCCTATATCACTTGGTGAAATGGTAAGCTTGAACTCCTTGGACTTGTCTCAAAATCTCTTGTCTGGTGTGATTCCAAAATCCCTGGAGTCACTTGCCTATCTCAAGTACATCAACCTTTCTTACAATAAATTGCAAGGAGAGATTCCCAATGGTGGGCCTTTTGTAAATTTCACTGCTCAATCTTTCATGCATAATGAAGCTCTTTGCGGAAATCCTCGCCTACAAGTCCCTCCATGTGCTAAACGCGTTAGGCAAAGATCAATGGCAAAATCGCTATTATTGAAATGCATGCTGCCCATAGTTGTGTCAATCTTTTTGGTTGTTACATGCATAATAGTTCTACGACTGAAAAGAAAAAATATGGGAAATCCGCTTGAAAGGAATTCATCAAATTTAGGAGCACTGAAAAGGGTTTCCTATTATGAACTTGTACAAGCAACTAATGGATTCAGTGAGAGTAATTTGCTTGGAAAAGGGAGTTTTGGTTCTGTTTATCAAGGGGTGCTCTCTAGTGGGTTGACGGCTGCAATTAAGGTTCTTAATTTGGACTTGGAAGTAGCATCAAAGAGCTTTGAAGCAGAATGCAATGCAATGCGCAACCTACGACATCGAAATCTCGTTAAGATTATTAGCAGTTGTTCAAACGATGATTTCAAATCTTTGATTATGGAGTACATGCCAAATGGAAGCCTCGACAAATGGTTGTACTCGCATAACTGTTGCTTAGATTTCTTGCAAAGGCTGGACATAATGATAGATGTGGCATCTGCATTGGAATATCTCCATCATGGTTCTTCAATACCAATTGTTCACTGTGACTTGAAGCCTAGCAATGTTTTATTGGATGAAAACATGGTTGCACATGTTAGTGATTTTGGCATTGCCAAACTCTTGGATGAGGGACAGTCTAAAACACATACTGAGACCTTGGCTTCACTTGGTTATGTTGCACCAGAATACGGATCTAGGGGTATTGTCTCTATCAAAGGAGATGTGTACAGCTATGGGATTATGTTAATGGAAATCTTCACAAGAAAGAGGCCAACAGATGATATGTTTGCAGCAGGGTTGACCTTGAAAAATTGGATTAGCGAGTCAATGCCCAATTCGACCAGGGAAGTTGTGGATCCAAATTTAGTACAGCTATATGGTGAACAATTTGATGGCATATTGCCTCATATATCATCTGTTTTGAGAATATCCTTGAGTTGCTGCATAGATTTACCCGAGGAACGAATTAAAATGACAAATGTCTCTGCAACATTGACCAAAATCAAAACTTCCATACAAATGACATAG 2184 0.3864 MPGDIGNLTKLQFLYLSENNLEGSIPSEISYLDQLGFLTMGFNKLSGPIPSKLFNISTLKFLYLSYNSLSDDSHEPNFLTSLTSSGRLTRIVVSNNPLKASLPSSIGNLSKSLQHFQADYCRVGGTIPLEIGNLSNLMGLSLHGNDIRGSVPATIKSLQNLQSLDLGYNGLQGSVVDELCEIRKISDLYLNNNKLSGVIPTCLGNMSSLRKLYLGSNMLTSEIPPSFWTLKDIIKVDLSSNALVGKLPPEIGKQRALILLNLSRNEISGNIPTTISFLKTMQDLSLASNKLEGSIPISLGEMVSLNSLDLSQNLLSGVIPKSLESLAYLKYINLSYNKLQGEIPNGGPFVNFTAQSFMHNEALCGNPRLQVPPCAKRVRQRSMAKSLLLKCMLPIVVSIFLVVTCIIVLRLKRKNMGNPLERNSSNLGALKRVSYYELVQATNGFSESNLLGKGSFGSVYQGVLSSGLTAAIKVLNLDLEVASKSFEAECNAMRNLRHRNLVKIISSCSNDDFKSLIMEYMPNGSLDKWLYSHNCCLDFLQRLDIMIDVASALEYLHHGSSIPIVHCDLKPSNVLLDENMVAHVSDFGIAKLLDEGQSKTHTETLASLGYVAPEYGSRGIVSIKGDVYSYGIMLMEIFTRKRPTDDMFAAGLTLKNWISESMPNSTREVVDPNLVQLYGEQFDGILPHISSVLRISLSCCIDLPEERIKMTNVSATLTKIKTSIQMT* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0561 727 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 128 - -
Dod03g0561 727 SUPERFAMILY RNI-like 2 345 - -
Dod03g0561 727 Pfam Leucine rich repeat 185 243 IPR001611 GO:0005515
Dod03g0561 727 Pfam Leucine rich repeat 283 339 IPR001611 GO:0005515
Dod03g0561 727 SMART LRR_typ_2 8 32 IPR003591 -
Dod03g0561 727 SMART LRR_typ_2 206 230 IPR003591 -
Dod03g0561 727 SMART LRR_typ_2 158 182 IPR003591 -
Dod03g0561 727 SMART LRR_typ_2 134 157 IPR003591 -
Dod03g0561 727 SMART LRR_typ_2 302 325 IPR003591 -
Dod03g0561 727 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 77 725 - -
Dod03g0561 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 564 576 IPR008271 GO:0004672|GO:0006468
Dod03g0561 727 Gene3D Transferase(Phosphotransferase) domain 1 521 727 - -
Dod03g0561 727 Gene3D Ribonuclease Inhibitor 76 382 IPR032675 -
Dod03g0561 727 Gene3D Phosphorylase Kinase; domain 1 426 520 - -
Dod03g0561 727 Pfam Protein kinase domain 446 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g0561 727 SMART LRR_sd22_2 302 328 - -
Dod03g0561 727 SMART LRR_sd22_2 8 34 - -
Dod03g0561 727 SMART LRR_sd22_2 278 299 - -
Dod03g0561 727 SMART LRR_sd22_2 158 181 - -
Dod03g0561 727 ProSiteProfiles Protein kinase domain profile. 445 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g0561 727 ProSitePatterns Protein kinases ATP-binding region signature. 451 473 IPR017441 GO:0005524
Dod03g0561 727 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 1 128 - -
Dod03g0561 727 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 77 725 - -
Dod03g0561 727 SUPERFAMILY Protein kinase-like (PK-like) 425 717 IPR011009 -
Dod03g0561 727 Gene3D Ribonuclease Inhibitor 1 75 IPR032675 -
Dod03g0561 727 SMART serkin_6 445 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0561 Dod-Chr3 6734217 6738763 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0561 19 721 Receptor kinase-like Gene Family AT3G47570 39.566 9.72e-154 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dod03g0561 Pkinase 2.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0561 - K13420 mtr:MTR_6g040210 875.159