Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0560 ATGGGCAAATTATTCTCTCGTCTCTCTATTTTCTGGCTCTCGCTGTATAATTACTTGGTGGCTTGCATAGCTGTGAGCAGCAGCACAAACATGAGCACCGATGAATCTGCGCTTCTCGCATTCAAGTCCTCTATTACCCTAGATCCCCATCTCACGGTTAATTGGTCAACATCTTCACCACTGTGCAATTGGGTTGGTGTCGCATGTGATTTGCGTGGTGGAAGAGTGAAGGCTTTGAATCTTAGTAAAATGGAGCTCGTAGGTACCGTTTCCCCACACGTGGGGAACCTGTCCTTCCTTGTGGAGCTCGACCTCAGCGGCAACAACTTCCATGGCGAGTTGCCACAGGAGTTGTTTCAGCTGAACCAGTTAAGGTTGCTAAACCTGAGCAACAACAACTTCACCGGTCCCATTCCGCATTCCATATTCAACTTGTCGGATTTGGAGTACCTTGACTGGTCAACGAATTCCATGAAAGGAGCCATTCCACCTGAGATTGGCCACCTTCGCCGGTTGAAGTTTTTGAGCTTTGAAAACAACACGCTTTCGGGAAATATACCACCGGCAATTTCGAACCTCTCCTCACTTGAAGAGATCAGCCTAGCTAATAACTCTTTATCAGGAGAAATTTTGAGGGGGATGGGTGATCTTGCCCAACTAAGAGTGCTGAACCTTAAGGATAATCAGCTTTCAGGGAACATACCACCGGCATTATTCAACAAGTCAATGCTACAACACCTTGTTCTTAGTGATAATCGTCTATCGGGCACTCTACCATCAAATATTTGTCAGGGGCTTCCAAAACTTAGAGTACTTTATCTTCACTATAATCGTTTTTCCGGTAAGATGCCACCTATTTGGCATCAATGCAAGGAGTTGGAAGATTTGCGGCTATCAAACAATAGTTTTGATAAAGGGCAGATACCAGATGACATCGGAAACTTGACCACGCTTCAATATTTGTATCTCTATGCGAGCAACTTAGAAGGTGAGATTCCATCCTCCCTTCTAAACATGTCTTCTTTGAGGCATTTGGTCCTTGGTACAAATCATTTAAATGGGAGCCTACCAGATGAGATGTGTCATCAGCTTCCTCAACTTGAAATCTTGTATTTAGATTACAATCAATTTAAGGGAGGCATTCCAAGATCAATTGGCAACTGCACATCGCTGAGACAATTGAGTTTAATGCAAATCTCTTTGACAGGTTTGATACCCATGGAGATTGGCGATCTTCGTCAACTCGAGTTTCTTGCAATGGGATTTAACGATTTGAGTGGACCTGTTCCTCATAAGCTTTTCAACATATCAGCATTGAAGTACTTGTATCTTTCATACAACTCTCTTTCAGGCACTCTTCCATCAGGAACGGGATATAGCCTACCAAACCTTGAGCAGCTACACTTGACTGGAAACAAACTTGTTGGAAACATTCCAAACGGTTTGTTCAATGCTTCCAAGCTCACTAAACTCGACTTGAGTGATAATGAATTGAGTGGTGTCATTCCCAATACATTTGGAGATTTAACTGTCCTTGAAGTTTTCCATATACATGACAATAATTTGACAACTGATGATTCCCACGAACCTAACTTTCTTACTTCCTTGACAAGTTCAAGGCATTTGACACGTATAGTAGTATCAGGTAATCCCCTGAAGACAAGTCTTCCGAAGTCAATTGGGAACTTATCCAAGTCTCTACAACTCTTTGAAGCAAATAATTGCGGAATTGATGGCACTATTCCATTGGAAATTGGAAACATAAGTAACTTGATGGGTTTATCTTTGAATGGGAATGATATCAGAGGATCAATTCCTGCTACAATTAAAAGGTTACAGAAGCTTCAGTCTTTGAATCTGAGCAACAATGGACTACAAGGATCCGTAGTTGAGGAGCTTTGTGAAATTGGGAGTTTAAGTCAGTTATATCTGTATAACAACCAGCTTTCTGGAGTGATACCAACATGCCTAGGAGATATGGCTTCTCTTAGAAAGGTTCACATAGGATCTAATAGACTGAACTCTTGGATACCTTCTTCTTTTTGGAATCTCAAAGATATCTTAGAGCTGGACTTATCCTACAATGCTTTAGTTGGAAATCTTCCACCAGAGATTGGGAAATCGAGAGCTCTTATTCTATTAAATCTGTCAGGAAATCAGATTTCAGGGAGCATTCCTACAGCCATCAGTTCCTTGCAAAATTTGCAAACTCTCTCCTTAGCAAGTAACAAATTACAAGGATTTATTCCTGATTCACTTGGTGAAATGATAAGCTTGAGCTCCTTGGACTTGTCACAAAATCTTTTGTCTGGTGTGATTCCAAAATCCTTGGAGTCAATTACCTATCTTAAATACATCAATCTTTCTTACAATAGATTACAAGGGGAGATTCCTAATGGTGGACCTTTTGTGAATTTCACTGCTCAATCTTTCATGCATAATGAAGCACTTTGTGGCAATCCTCGTCTACAAGTCCCTCCATGTGCTAAACAAGTTAGGCAAAGATCAAGGACAAAACAGCTTTTAGTGAAGTGCATAGTGCCCATAGTTGTGTCAATCATTTTGATTGTTGCATGCATAATAGTTCTACAACGTAAAAGAAAAAATGTGGGAGAACTTTTTTTTTTCGATACAGAAAGTGTGGGAAATATACTTGAAAGGAATTCGTCAACTTTAGGAGTACCAAGAAGGGTTTCCCATTATGAACTTGAACAAGCAACCAATGGATTCAATGAGAGTAATTTACTTGGAAGGGGAAGTTTTGGCTCTGTGTATCTAGGCATTCTCCCTAGTGGGTTGATGGTTGCAATTAAAGTGCTTAATTTGGAATTGGAAGCAGCATCAAAGAGCTTTGATGCAGAATGCAATGCAATGCGCAACCTACGCCATCGAAATCTCGTTAAGATTATCAACAGTTGTTCGAAGGATGATTTCAAATCTTTGATATTGGAGTACATGCCAAATGGAAACCTCGACAAATGGTTGTACTCACATGACTATAGCTTAGATTTCTTGGAAAGGTTGGATATAATGATAGATGTGGCATCTGCATTGGAATATCTCCATCATGGTTCTTCAATACCGATTGTTCATTGTGACTTGAAGCCTAGCAATGTTTTATTGGATGAACACATGGTTGCACATGTTAGTGATTTTGGCATTGCCAAGCTCTTGGATGAGGGACAATCTAAAACACATACAGAGACTTTGGCTACATTTGGCTATGTTGCACCAGAATATGGATCTAAGGGTATAGTCTCTGTCAAAGGAGATGTGTATAGCTATGGGATTATGTTAATGGAAGTCTTCACAAGAAAGAAGCCAACGGATGATATGTTTGCAGTAGGGCTGACCTTGAAAAATTGGATTAGTGAGTCAATGCCCAATTTAATCAAGGAAGTTGTGGATCCTAGTTTAGTACAACAATATGGTGAACAAATCGATGGCATATTGCCTTGTATATCATCTATCTTGAGATTAGCCTTGAGTTGTTGTGCAGATTCACCTGCAGAACGTATTAACATGACAAATGTATCTGCAATATTAACCAAAATCAAGAGTTCATTTACACACAAATGA 3579 0.4015 MGKLFSRLSIFWLSLYNYLVACIAVSSSTNMSTDESALLAFKSSITLDPHLTVNWSTSSPLCNWVGVACDLRGGRVKALNLSKMELVGTVSPHVGNLSFLVELDLSGNNFHGELPQELFQLNQLRLLNLSNNNFTGPIPHSIFNLSDLEYLDWSTNSMKGAIPPEIGHLRRLKFLSFENNTLSGNIPPAISNLSSLEEISLANNSLSGEILRGMGDLAQLRVLNLKDNQLSGNIPPALFNKSMLQHLVLSDNRLSGTLPSNICQGLPKLRVLYLHYNRFSGKMPPIWHQCKELEDLRLSNNSFDKGQIPDDIGNLTTLQYLYLYASNLEGEIPSSLLNMSSLRHLVLGTNHLNGSLPDEMCHQLPQLEILYLDYNQFKGGIPRSIGNCTSLRQLSLMQISLTGLIPMEIGDLRQLEFLAMGFNDLSGPVPHKLFNISALKYLYLSYNSLSGTLPSGTGYSLPNLEQLHLTGNKLVGNIPNGLFNASKLTKLDLSDNELSGVIPNTFGDLTVLEVFHIHDNNLTTDDSHEPNFLTSLTSSRHLTRIVVSGNPLKTSLPKSIGNLSKSLQLFEANNCGIDGTIPLEIGNISNLMGLSLNGNDIRGSIPATIKRLQKLQSLNLSNNGLQGSVVEELCEIGSLSQLYLYNNQLSGVIPTCLGDMASLRKVHIGSNRLNSWIPSSFWNLKDILELDLSYNALVGNLPPEIGKSRALILLNLSGNQISGSIPTAISSLQNLQTLSLASNKLQGFIPDSLGEMISLSSLDLSQNLLSGVIPKSLESITYLKYINLSYNRLQGEIPNGGPFVNFTAQSFMHNEALCGNPRLQVPPCAKQVRQRSRTKQLLVKCIVPIVVSIILIVACIIVLQRKRKNVGELFFFDTESVGNILERNSSTLGVPRRVSHYELEQATNGFNESNLLGRGSFGSVYLGILPSGLMVAIKVLNLELEAASKSFDAECNAMRNLRHRNLVKIINSCSKDDFKSLILEYMPNGNLDKWLYSHDYSLDFLERLDIMIDVASALEYLHHGSSIPIVHCDLKPSNVLLDEHMVAHVSDFGIAKLLDEGQSKTHTETLATFGYVAPEYGSKGIVSVKGDVYSYGIMLMEVFTRKKPTDDMFAVGLTLKNWISESMPNLIKEVVDPSLVQQYGEQIDGILPCISSILRLALSCCADSPAERINMTNVSAILTKIKSSFTHK* 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0560 1192 SUPERFAMILY L domain-like 567 821 - -
Dod03g0560 1192 SUPERFAMILY L domain-like 288 557 - -
Dod03g0560 1192 SMART LRR_typ_2 217 241 IPR003591 -
Dod03g0560 1192 SMART LRR_typ_2 684 708 IPR003591 -
Dod03g0560 1192 SMART LRR_typ_2 169 193 IPR003591 -
Dod03g0560 1192 SMART LRR_typ_2 612 635 IPR003591 -
Dod03g0560 1192 SMART LRR_typ_2 364 388 IPR003591 -
Dod03g0560 1192 SMART LRR_typ_2 436 460 IPR003591 -
Dod03g0560 1192 SMART LRR_typ_2 242 265 IPR003591 -
Dod03g0560 1192 SMART LRR_typ_2 266 289 IPR003591 -
Dod03g0560 1192 SMART LRR_typ_2 660 683 IPR003591 -
Dod03g0560 1192 SMART LRR_typ_2 732 755 IPR003591 -
Dod03g0560 1192 SMART LRR_typ_2 486 508 IPR003591 -
Dod03g0560 1192 SMART LRR_typ_2 339 363 IPR003591 -
Dod03g0560 1192 SMART LRR_typ_2 636 659 IPR003591 -
Dod03g0560 1192 SMART LRR_typ_2 97 121 IPR003591 -
Dod03g0560 1192 SMART LRR_typ_2 461 485 IPR003591 -
Dod03g0560 1192 SMART LRR_typ_2 756 779 IPR003591 -
Dod03g0560 1192 SUPERFAMILY Protein kinase-like (PK-like) 891 1182 IPR011009 -
Dod03g0560 1192 Pfam Leucine rich repeat 734 793 IPR001611 GO:0005515
Dod03g0560 1192 Pfam Leucine rich repeat 219 279 IPR001611 GO:0005515
Dod03g0560 1192 Pfam Leucine rich repeat 317 377 IPR001611 GO:0005515
Dod03g0560 1192 Pfam Leucine rich repeat 638 697 IPR001611 GO:0005515
Dod03g0560 1192 Pfam Leucine rich repeat 434 474 IPR001611 GO:0005515
Dod03g0560 1192 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Dod03g0560 1192 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 190 303 - -
Dod03g0560 1192 Gene3D Transferase(Phosphotransferase) domain 1 986 1192 - -
Dod03g0560 1192 Gene3D Ribonuclease Inhibitor 144 304 IPR032675 -
Dod03g0560 1192 Gene3D Ribonuclease Inhibitor 33 143 IPR032675 -
Dod03g0560 1192 Pfam Leucine Rich Repeat 123 145 IPR001611 GO:0005515
Dod03g0560 1192 Pfam Leucine Rich Repeat 487 507 IPR001611 GO:0005515
Dod03g0560 1192 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1029 1041 IPR008271 GO:0004672|GO:0006468
Dod03g0560 1192 Gene3D Phosphorylase Kinase; domain 1 893 985 - -
Dod03g0560 1192 CDD STKc_IRAK 916 1185 - -
Dod03g0560 1192 ProSiteProfiles Protein kinase domain profile. 910 1192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g0560 1192 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 268 385 - -
Dod03g0560 1192 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 10 140 - -
Dod03g0560 1192 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 190 303 - -
Dod03g0560 1192 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 123 262 - -
Dod03g0560 1192 SUPERFAMILY L domain-like 32 303 - -
Dod03g0560 1192 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 366 1190 - -
Dod03g0560 1192 SMART serkin_6 910 1189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g0560 1192 Gene3D Ribonuclease Inhibitor 527 836 IPR032675 -
Dod03g0560 1192 Gene3D Ribonuclease Inhibitor 305 526 IPR032675 -
Dod03g0560 1192 ProSitePatterns Protein kinases ATP-binding region signature. 916 938 IPR017441 GO:0005524
Dod03g0560 1192 Pfam Protein kinase domain 911 1178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g0560 1192 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 268 385 - -
Dod03g0560 1192 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 10 140 - -
Dod03g0560 1192 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 123 262 - -
Dod03g0560 1192 PRINTS Leucine-rich repeat signature 488 501 - -
Dod03g0560 1192 PRINTS Leucine-rich repeat signature 612 625 - -
Dod03g0560 1192 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 366 1190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0560 Dod-Chr3 6700843 6721317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0560 655 798 Receptor kinase-like Gene Family AT3G47570 34.722 2.85e-15 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dod03g0560 Pkinase 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0560 - K13420 gmx:100784397 1241.1