Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0559 ATGGATCAACCCGCAAGTGAAGGAAGAGGTGAGGTATTGGATCCTGTTCATGAAGGCGTTGATAGGAATTTGAGTCCTTCGTCTGAAGGGGTTGCAACTGATGCGGTAGGTGGTGGCAGCTTGAGTGATAGAGCTAGTATAAGTGGAGAAGTTGTGACTTCAGAAGAAAGGGGTAAGGATTTAGGGTCAGATAAGGAGGTAAAGAAGGAGCTTGAGGGTGTTGAGGGTGAGGACAAGCTTGATCAACAGAAAACCAGTGATACAATGTCTGGTGTTGATCAAGGAACTAGTCATGATTCAAACAATTTGGTTAATCAGGAAGTGCTCGAGACTGTGGTTGTAATAGAGCCTGTTCAGACTGAGTGTGTTAATGAGGATCGTAGGAAATCGGAAGTGCAAGTTAATGAATCAGGGCTGAGCAAGGTATCCATGAAAGCGACGAAAGGGGTGTCCGAAACAGATAAGAATTCATGTGTGATTGATATAAAGTGCAGCAGCCGCATAGGGTTTAGTGAGAGTTCGGAAGGTGAAAGGATTTGTAGGATTTGCCATCTGGCTTCCGGGCGACCGTCGGATGTAACGGCTGCTGGCACTGCTAATGGTGCTATTAGTACAGATTTGATTCAGCTCGGTTGTGCGTGCAAAGATGAGCTAGGCATTGCGCACATTCATTGTGCTGAGGCATGGTTCAAGCTTAGAGGAAACAGATTATGTGAAATATGTGGTGAGACTGCAAAAAATGTGTCGGGTGTTGCTGATACTGGATTCATGGAAGAGTGGAATGAAGGGAGATTCATGGACAACGATAACTCCTCCCGCAGGTTTGGTGGGTGTTGGCGAGGACAGCCATTTTGCAACTTCTTGATGGCATGCCTTGTAATTGCTTTTGTTCTGCCATGGTTTTTTCGTGTAAATATGTTCTAG 924 0.4545 MDQPASEGRGEVLDPVHEGVDRNLSPSSEGVATDAVGGGSLSDRASISGEVVTSEERGKDLGSDKEVKKELEGVEGEDKLDQQKTSDTMSGVDQGTSHDSNNLVNQEVLETVVVIEPVQTECVNEDRRKSEVQVNESGLSKVSMKATKGVSETDKNSCVIDIKCSSRIGFSESSEGERICRICHLASGRPSDVTAAGTANGAISTDLIQLGCACKDELGIAHIHCAEAWFKLRGNRLCEICGETAKNVSGVADTGFMEEWNEGRFMDNDNSSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0559 307 PANTHER ZINC FINGER, RING-CH-TYPE 1 307 - -
Dod03g0559 307 MobiDBLite consensus disorder prediction 1 100 - -
Dod03g0559 307 Pfam RING-variant domain 180 241 IPR011016 GO:0008270
Dod03g0559 307 SUPERFAMILY RING/U-box 175 244 - -
Dod03g0559 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 307 - -
Dod03g0559 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 253 IPR013083 -
Dod03g0559 307 ProSiteProfiles Zinc finger RING-CH-type profile. 172 248 IPR011016 GO:0008270
Dod03g0559 307 MobiDBLite consensus disorder prediction 53 84 - -
Dod03g0559 307 MobiDBLite consensus disorder prediction 85 100 - -
Dod03g0559 307 SMART ringv_2 179 242 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0559 Dod-Chr3 6696761 6699791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0559 152 306 C3H Transcription Factor Family AT5G05830 38.182 3.35e-30 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0559 - - gmx:100791720 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0559 03 6696761 6699791 Dod03g0559 03 6696761 6699791 ECH
Dod04g2162 04 45246625 45249638 Dod03g0559 03 6696761 6699791 PCT