Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0517 ATGGAAGTTACGATCAACACCATAAACAAAGCAAGCACCATAGCACTCTCCCAAAGCTTATTCCCTTTCCACGAGCTTATCCCCTTGGCATCACCGGGTTCATTGGTTTTGGATGATGACAAGCTGGGGGAGCTAGTGAAGTCCCCTGCAGGAGCTGCAAAGAAAGGTAAGAAGGTTTGTGATGAGGCCAAAGCTTTAGCTTTGAAGAATCATAGCGAGGCAGAGAGGAGGAGAAGGGAGAGAATTAATTCTCATCTTGCAACACTGCGTGGACTTGTCCCCTCTACTGCAAAGATGGACAAAGCCACACTACTGGCTGAAGTAATTAGCCAAGTGAAGGAATTGAAGAAGAATGCAGTGGAAGCAAGCAAAGGTTTTCTAATCCCAACGGATGCTGATGAAGTGAAAGTTGAACCATATGATGATGAAGGAGGGCATGGATCAATGGCTTACAGGGCATCTGTCTGCTGCGATTACCGACCTGAGCTATTGTCTGATCTAAGACAAACTTTTGATGCCCTTCAACTACAATTGGTGAAAGCAGAAGTGTCAACTTTGGGAGACAGGGTGAAGAATGAATTTGTGTATACATGCTGCTGTAAAGGGAACATTATTGATATTGAGGCATGCCAACTTCTTGCAAGTACTGTTCACCAGGCACTGAGTTCTGTACTTGATAAGGCTTCAACATCACTGGACTACTCACTAAGAACATCACATCCCAGCAAGCGGAAAAGACTATGCTTTATTGAAACATGTACTGCCTCATGCAACCATGAATGTTGTTCATGTTGA 795 0.4428 MEVTINTINKASTIALSQSLFPFHELIPLASPGSLVLDDDKLGELVKSPAGAAKKGKKVCDEAKALALKNHSEAERRRRERINSHLATLRGLVPSTAKMDKATLLAEVISQVKELKKNAVEASKGFLIPTDADEVKVEPYDDEGGHGSMAYRASVCCDYRPELLSDLRQTFDALQLQLVKAEVSTLGDRVKNEFVYTCCCKGNIIDIEACQLLASTVHQALSSVLDKASTSLDYSLRTSHPSKRKRLCFIETCTASCNHECCSC* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0517 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 117 IPR036638 GO:0046983
Dod03g0517 264 SMART finulus 72 121 IPR011598 GO:0046983
Dod03g0517 264 Coils Coil 164 184 - -
Dod03g0517 264 Pfam Helix-loop-helix DNA-binding domain 70 115 IPR011598 GO:0046983
Dod03g0517 264 CDD ACT_UUR-ACR-like 154 195 - -
Dod03g0517 264 Gene3D - 63 124 IPR036638 GO:0046983
Dod03g0517 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 115 IPR011598 GO:0046983
Dod03g0517 264 PANTHER DNA BINDING PROTEIN-LIKE 31 257 - -
Dod03g0517 264 PANTHER TRANSCRIPTION FACTOR BHLH30 31 257 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0517 Dod-Chr3 6187480 6190466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0517 40 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.667 2.71e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod03g0517 HLH 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0517 - - gmx:100804756 331.257