Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0516 ATGCCTACTCCTTCTCCTCCTCCTCCATCATCATCATCATCTTCCTCTTCTTCCTCTGTTTGGGTGTTATCTAACATAAAGCTTCAATTCTTTGCCCGCATCAGAAGGTTTCTCCAATCCAAAGCAACCCGAAAGCGCGACAACCCATCAAAAAACAGAGCTGAGCAGAACAACAAGGTTGAAAAACTTGAAACAGTTGTTCAAGACACGGAGAAGCATGAAGAAGAAGAAGACTCGGCAATCCTATTGCAGAGGACAGTGAAGAAGCTTCACTTTGGAAACTGGGAAGAGAAAGAGGTGGCAGCAAAAGATATTGAAAGGTTAGCCAAAGAAGATGTTAAGGTTAGAAAGTTGATAACAGGACTTGGCGTGGTGCCTGTGTTGGTCTCTATGGCTGCCTCCGACTTGGCTAGCCGCCGCCGAGCAGCGTTGACGGCGTTGATCTACCTTGCTGATGGAACCTACTCGAGCAAGGCTTTGATAGTGGAGGCAGGAATATTGTCCAAGCTGCCAAATGCAGTTGACCTTGTAGATGAATCAACAATGAGTGAATTTGCTGAGTTACTCCTATCTTTGTCATCACTAACCAACACCCAATTCCGTTTCCCTTCATTAGACTTTCTCCCATTACTTAGAGACAGTCTTGAGTCATGCTCGAGTTTTGATACCAAAAGATCATGTTTGGGTGCCCTATACAACCTCTCAACCGCGTTGGAGAATGCAGGCCCTTTGGTTTCTAGTGGGGTTGTGCCTACCCTCTTGGAACTTTCCTCGGTGAAAGACATTTCAGATAAAGCACTAGCCACTCTAGGGAACTTGTTGGTGACTTTGATGGGAAAGAAGGCTATAGAGAATAGCTCAATGGTTCCACAATGCTTCATTGAGATCTTGTCATGGGAAGATAAACCCAAATGCCAAGAGTTATCGGTTTATATTTTGATGATTCTAGCACATCAAAGTTCATCTCAAAGAGAGAAAATGGCAAAAGCTGGGATTGTGCATGCACTTCTTGAGGTGGTTCTATTGGGGAGCCCTTTAGCTCAGAAGAGAGCACAAAAACTATTGCAATGGTTCAAGGATGAAAGGCAAACTAAAATGGGGCCACATTCAGGTCCACAAACACCAAGATTTGCAATGGGATCACCTGTGAATCAAAGGGAAGCAACAGAAGGGAAGAAATTGATGAAGAGTTTGGTGAAACAAAGCTTGCATAGGAATATGGAAATAATAACGCAGAGGGCAAATGCAGCTGGGGAGTCTTCTAGATTGAAGTCATTGGTTATCAGCACAAGTTCTAAGAGTTTGCCTTACTAA 1314 0.4391 MPTPSPPPPSSSSSSSSSSVWVLSNIKLQFFARIRRFLQSKATRKRDNPSKNRAEQNNKVEKLETVVQDTEKHEEEEDSAILLQRTVKKLHFGNWEEKEVAAKDIERLAKEDVKVRKLITGLGVVPVLVSMAASDLASRRRAALTALIYLADGTYSSKALIVEAGILSKLPNAVDLVDESTMSEFAELLLSLSSLTNTQFRFPSLDFLPLLRDSLESCSSFDTKRSCLGALYNLSTALENAGPLVSSGVVPTLLELSSVKDISDKALATLGNLLVTLMGKKAIENSSMVPQCFIEILSWEDKPKCQELSVYILMILAHQSSSQREKMAKAGIVHALLEVVLLGSPLAQKRAQKLLQWFKDERQTKMGPHSGPQTPRFAMGSPVNQREATEGKKLMKSLVKQSLHRNMEIITQRANAAGESSRLKSLVISTSSKSLPY* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0516 437 Coils Coil 53 73 - -
Dod03g0516 437 MobiDBLite consensus disorder prediction 364 390 - -
Dod03g0516 437 SUPERFAMILY ARM repeat 87 355 IPR016024 -
Dod03g0516 437 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 72 437 - -
Dod03g0516 437 Gene3D - 50 427 IPR011989 -
Dod03g0516 437 SMART arm_5 237 275 IPR000225 GO:0005515
Dod03g0516 437 SMART arm_5 112 152 IPR000225 GO:0005515
Dod03g0516 437 SMART arm_5 168 236 IPR000225 GO:0005515
Dod03g0516 437 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 72 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0516 Dod-Chr3 6173168 6176320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0516 83 367 U-box Gene Family AT2G23140 25.874 3.93e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0516 - - gmx:100813828 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0516 03 6173168 6176320 Dod03g0516 03 6173168 6176320 ECH