Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0494 ATGAATTTACTCACCCAAACTCCCAATAAAGTTCCAAATCTTTTGTTTCAGCTTCCTCTAATAATCTCCCTTCTCCTATTCACGTGTCATACAGGAGCTCAAGCTGCCAACAGTCCCCAGAATACAAGTGTTGGAGTGATCATTGATGTCAATTCCGAGATGGGTAAACAACAGAGAAGAGCCATGGATATTGCAGCTCAAACTTTCAATAATCGTTCAAAGACTCACAACATAGTCCTTTTCTTCCGTGACCCTGGTGGGAACCCATTGCATGCAGCTTCAGCTGCTGAAGAACTAATTAATAAGAAGAAAGTTAAAGTTATTGTTGGCATGGGGACATGGCAAGAAGCTGCTCTAGTTGCTGACCTTGGAGCCAAAGCTCAAGTACCTGTCATTTCATTTTCTGCTCCCTCAGTAGCCCCTCCATTAATGCAACTTCGTTGGCCTTTCTTGATTCAAATGGCTGAATATCAGGCTGCACACATGAACTGCATAGCAGATATTATCCATGCATACAACTGGGGAAAGGTTGTAGCAATATATGAAGACAACCCTTATAGTGGTGATTCCGTGATGTTAAGCCTCTTATCTGAGGCTCTCCAAAAAGTTGACTCAGAGATTGAGTACCGACTAGTCCTTCCACCGTTCACTCCTTCGTCCAATCCAAAAGGGGTTGTTCTTGATGAATTGCTTAAGCTATTGTCTGTAAAATCTCGGGTCTTTGTTGTCCTTCAAGCATCATTACCTATGGTGACCAATTTGTTCAGAGAAGCTAAGAAGGTTGGATTGATGGAGAAAGAGTCAGCTTGGATAATCAATGAGAGGATTACTAGTACATTGGAATCTGTCAATGCATCTGTTTTATCCTCGATGGAAGGTACTTTGGGGATCAAAACCTATTACTCTACAAATTCTAGTGCTTACATTATGTTGCAAGAAAATTTCCAAGCTGAGCATACAGAAGAAACATCCAACCCAGGATTACATGCAGTACGAGCCTATGATAGCATTACAATCATCACAGAGGCCTTGGAGAAAATGAATGCTAACTCTAGCAACTCAAGGGTGTTCTTGAAGAAAATGTTGTCTAGCAATTTTGCTGGTTTAAGTGGGAATATAAGTTTCACAGAAAACCATTTATCCTACACTCGAATAATGAGAGTCATAAATGTGGTTAATGAGAAATACACAGAATTGGGCTTTTGGACCCCAGAATTGAAGTTTGCCAGTTCTCTTGAAATAGTTGAAGACAGAGAGAAAAGAGGTGATCTTGCTACAAATGGCTTAACTGGCCCAGTGGTTTGGCCTGGAGGCCTAAGTTATACTGATGATCCTCCTAAGGGATGGCGATTACCTACCAATACAAATCCTGTAAAAGTTGCAGTTCCTGTAAACCCTGCTTTTGAAAATTTTCTGAAGGTAGACTCTCAAAAGCATTATAAAGGTTTCTGTATTGATCTTTTCTACAATATACGAGGAATTCTGAGTGACAAGTACGCTGGCCTGCCCTATATATTTCATTCCTTCAATGAATCCTATGATAATCTTCTTGAGAGTGTCATAAACCAGTCCCATGATGCTATTATAGGAGATGTAACAATACTAGCCAATCGATCAAAGTATGTGTCATTCACTCAACCCTACACTGAGTCAGGATTATCACTCATTCTTCCAGCAGAGGCTGAAGGGTCAGCATGGTTGTTTTTGAAACCATTTAGCTGGGAAATGTGGATAGCAACTATTGCCATCCTCATCTACACAATGTTTGTCATCTGGATCTTGGAGCATCGCTTGAATCCAGATTTTGGTGGACCATTGAAAAATCAGATCAGCACCACACTGTGGTTTGCTTTTTCTTCTCTATTCTTCGCTCACAGGGAGAAAATAAACAGCAACTCTGCACGAGTAGTAGTTGGTGTATGGTTATTTCTTGTGTTTGTTCTAACATCAAGCTACACTGCCAGCCTTTCTTCAATGCTTACTGTCACACGGTTGAGGTCTGGAAGAAATATTGAATGGCTGAAGCAAAACAACTTACCAGTCGTTTGTGATAATCTCAGTATCTTTGTAAAGAGCTACATGGTGGACGTGTATAATTTCCGTCCACAGCAAATAATAGGTGTTGATGGTGAGGATGACATTCTGGAGAAGTTCAAGAGCAAGAAAATTGCTGCTCTATTTCTTGAGAGCCCATATGAGAAGGTGTTCTTGAATAAGTATTGCAATGAGTACACTGCAACCACTGCTACATATAAATTTGGAGGAATGGGCTTTGTATTCCAAAAGGGAACTCCCATGGCAAGAGATTTCTCTGAAGCCATTTTAGAACTAGCAGAAAATGGAACACTGAACAAGTTAGAAAATGATTGGTTGACACCTTCCAATGAATGCTCAAACGACTCAAAATCCCCTGAAACTGAGAAACTGACCCTGAACAATTTTTGGGGTCTCTACGGTATATGTGCTACCACTTCCACCATATGCCTAGTGGTGGCCTTGCTAAGAAATTACCACCATAACCATTGCCAACATCAAGATGATGCAGGTCAACTTGAAGGGAATGTAGCCACCGATGATAATAGTGTTTGGAAGAAGGCATTTGGAATCAATAAAGAATTTTACAATGGGGGTCTCAAAACTTTTGGTAGGGCTGCAACTATTGGTGGAACACAGGGTGTACGTCGGAGGAATTCACCAAGGTCGGAGAGTATAAGCACTTCTGAGCACGTGGACAATCCACAGCGCTGCCGATCAGCGGTCATAGAAATGCTATAG 2775 0.4112 MNLLTQTPNKVPNLLFQLPLIISLLLFTCHTGAQAANSPQNTSVGVIIDVNSEMGKQQRRAMDIAAQTFNNRSKTHNIVLFFRDPGGNPLHAASAAEELINKKKVKVIVGMGTWQEAALVADLGAKAQVPVISFSAPSVAPPLMQLRWPFLIQMAEYQAAHMNCIADIIHAYNWGKVVAIYEDNPYSGDSVMLSLLSEALQKVDSEIEYRLVLPPFTPSSNPKGVVLDELLKLLSVKSRVFVVLQASLPMVTNLFREAKKVGLMEKESAWIINERITSTLESVNASVLSSMEGTLGIKTYYSTNSSAYIMLQENFQAEHTEETSNPGLHAVRAYDSITIITEALEKMNANSSNSRVFLKKMLSSNFAGLSGNISFTENHLSYTRIMRVINVVNEKYTELGFWTPELKFASSLEIVEDREKRGDLATNGLTGPVVWPGGLSYTDDPPKGWRLPTNTNPVKVAVPVNPAFENFLKVDSQKHYKGFCIDLFYNIRGILSDKYAGLPYIFHSFNESYDNLLESVINQSHDAIIGDVTILANRSKYVSFTQPYTESGLSLILPAEAEGSAWLFLKPFSWEMWIATIAILIYTMFVIWILEHRLNPDFGGPLKNQISTTLWFAFSSLFFAHREKINSNSARVVVGVWLFLVFVLTSSYTASLSSMLTVTRLRSGRNIEWLKQNNLPVVCDNLSIFVKSYMVDVYNFRPQQIIGVDGEDDILEKFKSKKIAALFLESPYEKVFLNKYCNEYTATTATYKFGGMGFVFQKGTPMARDFSEAILELAENGTLNKLENDWLTPSNECSNDSKSPETEKLTLNNFWGLYGICATTSTICLVVALLRNYHHNHCQHQDDAGQLEGNVATDDNSVWKKAFGINKEFYNGGLKTFGRAATIGGTQGVRRRNSPRSESISTSEHVDNPQRCRSAVIEML* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0494 924 Pfam Ligand-gated ion channel 793 823 IPR001320 GO:0015276|GO:0016020
Dod03g0494 924 Pfam Receptor family ligand binding region 59 378 IPR001828 -
Dod03g0494 924 SMART GluR_14 459 793 IPR001320 GO:0015276|GO:0016020
Dod03g0494 924 Gene3D - 453 564 - -
Dod03g0494 924 Gene3D - 157 404 - -
Dod03g0494 924 Gene3D - 735 799 - -
Dod03g0494 924 SUPERFAMILY Periplasmic binding protein-like II 433 792 - -
Dod03g0494 924 Pfam Bacterial extracellular solute-binding proteins, family 3 464 792 IPR001638 -
Dod03g0494 924 PANTHER GLUTAMATE RECEPTOR 16 920 - -
Dod03g0494 924 SUPERFAMILY Periplasmic binding protein-like I 38 449 IPR028082 -
Dod03g0494 924 MobiDBLite consensus disorder prediction 891 910 - -
Dod03g0494 924 PIRSF IGluLR_plant 13 875 IPR017103 -
Dod03g0494 924 Gene3D - 565 699 - -
Dod03g0494 924 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 16 920 - -
Dod03g0494 924 CDD PBP1_GABAb_receptor_plant 43 412 IPR044440 -
Dod03g0494 924 Gene3D - 52 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0494 Dod-Chr3 5919283 5928523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0494 8 855 Ion Channels AT2G29120 32.090 7.57e-135 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0494 - - gmx:100818078 1301.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0494 03 5919283 5928523 Dod03g0494 03 5919283 5928523 ECH