Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0493 ATGATTAAAATGCAGAAGGTGCAAGTGATTATAGGCATGCACACATGGCCAGGAGCAGCTCTTGTGGCTGAAATAGGAACCAGAGCTCAAGTTCCTACCATATCCTATGCAGAACCTACCATTACCCCACCATTGATGCAAATTCGATGGCCTTTTTTGGTGAGACAGGCTAACAGGGGCACAGCATACATAAAATGTATGGCGGATATAGTGAAAGCTTATGAGTGGCAAAGAGTTGTAGCCATCTATGAAGAAGATGCCTATGGTGGAGATCATGGTATGCTAGCTTTCCTATCTGAGGCCCTCCAAGATGCAAGTTCAATGATTGAGTACAATTTAGCTCTTCCACCAATTTCTTCTCTACATGATCCTAGAGAGCTAGTGCGTGACGAGCTTCTTAAGATAACGCAAACACAATCTAGGGTGTTCATTGTGCTGCAATCATCACTAGAAATGGTGATTCACTTGTTCAGAGAAGCCTCAAAAATGGGACTTGTGGATAGAGAATCAGTTTGGATAATCCCAGAGAGCATAGCTAATTTGTTGGACTCTATAAACAAGTCTTCCATTTCCCATATGCAAGGAGCTATAGGAATCAAGACCTACTACTCCGAAAGCAGCAGCAAGTATCAAGAGTTTGAGGCTCAGTTCAGGAGAACATTTTGGGGAAGGAATCCTGAGGAAGATAACCGCAACCCAGGATTTTATGCTTTGCAAGCGTATGATAGCATTAGCATTGTCACTCATGCAGTGGACAGAATGGACAATGGCAACAATAGCAGCCTGAAGAACTTATTGAAGGAAATACAGTCAAACAATTTCCCTGGTTTAAGTGGCCCTATTAAATTTAAAGATGGTAAACTCCAGCAGAATCCTATCTTAAGGATAGTAAATGTGGTTGGTAAGAGTTACAAAGAATTGTGCTTTTGGACTCAACAAGGGTTCACCACAAGCCTCCCTACAGGACAAGGTGGGGGTAACAGTGTTTCAGAAGGCTTCAAAGGTGTGCTTTGGCCTGGGAATTTGCAGCGACCTCCAAAGGGATGGAAGATGCCTACTAAACCAAATGCTATGAAAATCGCAGTCCCAGGCAGAACCTCATTTTCCAGGTTTGTCAAGGTAGATTATGACCAGAATGGGAATCCTTATAACTATAATGGATTCTGCATTGATATTTTTGAGAAGGTGGTAGGACTTTTGGGGTATGATCTGCCCTTTAAGTATCATGCCATCAACGGAACCTATCCTGATTTGGTTGAACTTGTCTATAACAAGACTTATGATGCTGTTGTTGGGGATATGACCATACTAGAGGAAAGATTGCAGTATGTGGATTTTACTGTGCCATATGCAGAATCAGGATTGTCAATGATTGTTCCAACAAAGTCTGAAGAGTCAGCATGGATGTTTACCAAGCCCTTTACCTGGCAATTGTGGACAGTTACAGGTGCCATCTTGATTTACACAATGTTAGTAGTTTGGCTACTTGAGAGAGAACCAAATCCAGAGTTTCATGGCAATTGGAAGAGCCAGATCAGCACTGCTCTTTGGTTTACCTTCTCTTCTTTGTTCTTCGCACATAGGGAAAAAATGTACAGAAAGTTAACTCGCGTGGTAATGGTCTCATGGCTCTTTCTTGTTCTGATTCTCAACTCAAGCTACACTGCTAGTCTTTCTTCAATGCTCACAGTAAAACAACTGCAGCCTAATGTCACAGACATTCAGTGGCTGAAGAAGAACAACATGAAGATCGGTTGTGATGGCGACTCATTTGTTAGGACATACCTAGAGAATGTAGAGAAGTTCAGGCCGGAGAACATCATAAACGTTTCTAGCGAATACAAGTATGTTGACGCATTTGCAAATAACAGCATAGCAGCTGCATTTCTGGAACTCCCATATGAAAAAATATTCATTAGTGAACACTGTGATGGATACAGTGGCTCCACTCCCACAGTCAGACTCGGAGGATTGGGCTTTATGTTCCAGAAAGGCTCCCCAGTGGCCAAAGATGTTTCTAAAGCTATATTACATCTCTCAGAGAAGGCAGAGCTGAAGAGACTTACACCAAAAGATTGCTCCGACAGCATGACCTCCAACAGTGAAGAAAGTTTGAAGCTAAGAAGCTTATGGGTTCTGTTTGTCATCTCTGGTGCCACTTCCACCATTTGTCTGATACTATCAACCATCCAGTGGCAAAAATTAAGTCAACAAGTGGCACCAGTAGGCCATAATGGCACACCAAGTGATGAGAGAGTGTGGGAAAGGGTGATGACACTTGCAAGGCAGGTTTATAACAAGAAGGTCAACAATTCAAGTGATGCACATGGTGCAACTGATTTGTCTTCGAGATGGGATCATTTGAGCACTGCTGATAGCACTGAGCATCATCAGCAGGAATCGGCTTCCCCGGTTCCTAGAATTAGAAGAGTCTTCATGCGCTCTTCTTCATTACCACAGGTACAGATGTCATAG 2475 0.4275 MIKMQKVQVIIGMHTWPGAALVAEIGTRAQVPTISYAEPTITPPLMQIRWPFLVRQANRGTAYIKCMADIVKAYEWQRVVAIYEEDAYGGDHGMLAFLSEALQDASSMIEYNLALPPISSLHDPRELVRDELLKITQTQSRVFIVLQSSLEMVIHLFREASKMGLVDRESVWIIPESIANLLDSINKSSISHMQGAIGIKTYYSESSSKYQEFEAQFRRTFWGRNPEEDNRNPGFYALQAYDSISIVTHAVDRMDNGNNSSLKNLLKEIQSNNFPGLSGPIKFKDGKLQQNPILRIVNVVGKSYKELCFWTQQGFTTSLPTGQGGGNSVSEGFKGVLWPGNLQRPPKGWKMPTKPNAMKIAVPGRTSFSRFVKVDYDQNGNPYNYNGFCIDIFEKVVGLLGYDLPFKYHAINGTYPDLVELVYNKTYDAVVGDMTILEERLQYVDFTVPYAESGLSMIVPTKSEESAWMFTKPFTWQLWTVTGAILIYTMLVVWLLEREPNPEFHGNWKSQISTALWFTFSSLFFAHREKMYRKLTRVVMVSWLFLVLILNSSYTASLSSMLTVKQLQPNVTDIQWLKKNNMKIGCDGDSFVRTYLENVEKFRPENIINVSSEYKYVDAFANNSIAAAFLELPYEKIFISEHCDGYSGSTPTVRLGGLGFMFQKGSPVAKDVSKAILHLSEKAELKRLTPKDCSDSMTSNSEESLKLRSLWVLFVISGATSTICLILSTIQWQKLSQQVAPVGHNGTPSDERVWERVMTLARQVYNKKVNNSSDAHGATDLSSRWDHLSTADSTEHHQQESASPVPRIRRVFMRSSSLPQVQMS* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0493 824 SUPERFAMILY Periplasmic binding protein-like II 336 689 - -
Dod03g0493 824 SMART GluR_14 359 695 IPR001320 GO:0015276|GO:0016020
Dod03g0493 824 Pfam Receptor family ligand binding region 5 300 IPR001828 -
Dod03g0493 824 Pfam Bacterial extracellular solute-binding proteins, family 3 384 689 IPR001638 -
Dod03g0493 824 CDD GluR_Plant 359 688 - -
Dod03g0493 824 Gene3D - 467 606 - -
Dod03g0493 824 Gene3D - 246 361 - -
Dod03g0493 824 Pfam Ligand-gated ion channel 690 719 IPR001320 GO:0015276|GO:0016020
Dod03g0493 824 PANTHER GLUTAMATE RECEPTOR 3.4 1 803 - -
Dod03g0493 824 Gene3D - 62 232 - -
Dod03g0493 824 Gene3D - 364 466 - -
Dod03g0493 824 CDD PBP1_GABAb_receptor_plant 2 319 IPR044440 -
Dod03g0493 824 SUPERFAMILY Periplasmic binding protein-like I 5 349 IPR028082 -
Dod03g0493 824 PIRSF IGluLR_plant 1 820 IPR017103 -
Dod03g0493 824 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0493 Dod-Chr3 5908004 5911138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0493 1 727 Ion Channels AT2G29120 33.684 6.46e-134 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0493 - - gmx:100818619 1184.86