Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0488 ATGGACATCCATAGTAATCATCATGCAAATTCTGAGGGAATTCTTGAGAACGTATGGGCTAAAATTATCAGCAGTACTGATAGAGCAGACGACAGAAGAACATGTGGTGATGCAGCAGAATCTTCCAACTCATGGGAAGAACTTCCTGACCTTGATGGAAGAGATGGGTCCATGGAAATCCTGCAAAGGCTTCCAAGTTTAGGGAGATGGATATCAATGGGAGCTGACTTCTGGGAAGAAGTTTTGGATGGTATTATTGTACCAACTTCAACAAGCAATACAGATCAAGATTCTAGCAACAACAAATTGGAAATTGGCAGCGCCACTATATCCAATAGAAAGGTAGAAAAAAATTCAGTGAGAACAGAAAAGGCAGTAACAAAACACTACAGGGGAGTAAGGAGAAGGCCATGGGGTAAATATGCAGCTGAGATTAGAGATTCATCAAAGAAAGGTGCTAGAGTTTGGCTTGGGACATTTGACACTGCTGAAGAAGCTGCTTTAGCATATGACAAGGCTGCTTTGAGGATTAGAGGCCCCAAGGCACACCTCAATTTCCCAATTGAGACGGTCTCATCAAAGACCTTAGGATTTGGCCATAAAGGAAATGAGGATTGCTGTGGTTGCACATACATAGGGAACATGGAAAATTCTTGCAGTTCCCGGAAGAGAGGATCAAGGGACAGGGAAGAATTTGTTGATGTGATGAAGGAACAACCTGCAGCAAAAAGGGTGGCAAGCTTGGAAGGCATCATGCTAGAAAATGAACTAGATGTTTTTGTATTTCAGGACCTAGGAAGACCACCAGACAATAACATGGCCCCAGTTCTGCGACATGGTGGAATTGAACTGAATGATAATTTACTGTTGATGCTCCCAGTGCAAAGCCTCAAGGAGAAGATGCTGACATTCCCTGAATGTGAGGGAGAAAATATTCCAAAGATTGCAGGGAATATGGCCACTAACACATACATAGACAAAAATATATTTAAGAGGCTTGAGTAG 1005 0.4239 MDIHSNHHANSEGILENVWAKIISSTDRADDRRTCGDAAESSNSWEELPDLDGRDGSMEILQRLPSLGRWISMGADFWEEVLDGIIVPTSTSNTDQDSSNNKLEIGSATISNRKVEKNSVRTEKAVTKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFPIETVSSKTLGFGHKGNEDCCGCTYIGNMENSCSSRKRGSRDREEFVDVMKEQPAAKRVASLEGIMLENELDVFVFQDLGRPPDNNMAPVLRHGGIELNDNLLLMLPVQSLKEKMLTFPECEGENIPKIAGNMATNTYIDKNIFKRLE* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0488 334 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF091 16 267 - -
Dod03g0488 334 SMART rav1_2 129 193 IPR001471 GO:0003700|GO:0006355
Dod03g0488 334 Pfam AP2 domain 129 179 IPR001471 GO:0003700|GO:0006355
Dod03g0488 334 SUPERFAMILY DNA-binding domain 129 189 IPR016177 GO:0003677
Dod03g0488 334 Gene3D AP2/ERF domain 128 189 IPR036955 GO:0003700|GO:0006355
Dod03g0488 334 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 267 - -
Dod03g0488 334 MobiDBLite consensus disorder prediction 31 52 - -
Dod03g0488 334 ProSiteProfiles AP2/ERF domain profile. 129 187 IPR001471 GO:0003700|GO:0006355
Dod03g0488 334 PRINTS Ethylene responsive element binding protein signature 153 169 IPR001471 GO:0003700|GO:0006355
Dod03g0488 334 PRINTS Ethylene responsive element binding protein signature 130 141 IPR001471 GO:0003700|GO:0006355
Dod03g0488 334 CDD AP2 128 188 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0488 Dod-Chr3 5858306 5860030 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0488 14 238 AP2-EREBP Transcription Factor Family AT4G18450 44.828 1.07e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod03g0488 AP2 4.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0488 - - gmx:112999553 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0488 03 5858306 5860030 Dod03g0488 03 5858306 5860030 ECH