Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0487 ATGGTTTTAGTGTCCTCGCACTCCCAAACAGAGTTACCCTTCAATGAGAACGACTCACAGGACATGGTCATATATCAAGTCCTGAACGAGGCCAATGCTATCAGCAACACATTCATGCCTCAGAGGCTCCACCACCAACAACAGCACCAATTAGTCCTCAATAGTGGGCAATACGGCATGGAACCAACCAGGAACATAGCAAAGAATAAGCACTACAGAGGGGTGAGGCGTCGCCCTTGGGGCAAGTATGCTGCAGAGATTCGTGACTCGGCACGCCATGGAGCCAGGGTATGGCTTGGAACCTTCCAAACTGCTGAAGAAGCTGCCATGGCTTATGACAGAGCTGCTTTCAAGATGAGGGGTTCCAAGGCCTTGTTGAATTTCCCAGCTGAAGTTGTTGCTGCTGCTTCTTCCAGGCAATTATCTTCTAATAATAAGCATGATTTGAATAATAATCATAATAGTAGTAACAATCAGGATTCTGATTCAAGTGCTACCACTAGCAGTTCTTGCACAAATTCTCAGTTAGAAAGCACAAGTAGCACGGTCTCCTAG 555 0.4649 MVLVSSHSQTELPFNENDSQDMVIYQVLNEANAISNTFMPQRLHHQQQHQLVLNSGQYGMEPTRNIAKNKHYRGVRRRPWGKYAAEIRDSARHGARVWLGTFQTAEEAAMAYDRAAFKMRGSKALLNFPAEVVAAASSRQLSSNNKHDLNNNHNSSNNQDSDSSATTSSSCTNSQLESTSSTVS* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0487 184 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 6 146 - -
Dod03g0487 184 ProSiteProfiles AP2/ERF domain profile. 71 129 IPR001471 GO:0003700|GO:0006355
Dod03g0487 184 SUPERFAMILY DNA-binding domain 71 131 IPR016177 GO:0003677
Dod03g0487 184 MobiDBLite consensus disorder prediction 139 184 - -
Dod03g0487 184 SMART rav1_2 71 135 IPR001471 GO:0003700|GO:0006355
Dod03g0487 184 CDD AP2 70 130 IPR001471 GO:0003700|GO:0006355
Dod03g0487 184 Gene3D AP2/ERF domain 70 131 IPR036955 GO:0003700|GO:0006355
Dod03g0487 184 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700|GO:0006355
Dod03g0487 184 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Dod03g0487 184 Pfam AP2 domain 71 121 IPR001471 GO:0003700|GO:0006355
Dod03g0487 184 PANTHER DNA-BINDING DOMAIN 6 146 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0487 Dod-Chr3 5853426 5854615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0487 6 132 AP2-EREBP Transcription Factor Family AT4G17500 48.611 2.84e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod03g0487 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0487 K13433 - gmx:100811533 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0487 03 5853426 5854615 Dod03g0487 03 5853426 5854615 ECH