Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0473 ATGGGGTTGATCGATCTCAACACCACAGAGGAAGATGAAGCTCCTGCATCTGGTTCCACAACAGGTTCTGCTTCATCACCATCTCACTCAGGTATAAGCACTTCAGCATCAGCTTTGGCTCCTCCTCCTCCTTCTTCTGTGTGCTTGGAGCTATGGCACGCGTGTGCAGGGCCTATGATCTCTTTGCCAAAGAAAGGAAGCGTTGTTGTGTACCTGCCACAGGGGCACTTTGAGCAAGCTCAGGATTTTCCACTCACTTCCTATAATGACATCTCTTGCCATGTGTTCTGTCGCGTTCTTGATGTCAAGCTCCATGCAGAGGAAGGCAGCGATGAAGTGTATTGCCAGGTCTTGTTGGTTCCTGAAAGTGAGCAAGTGGGAAAAACCTTGCGGCTAGGGGAAATTGATGCTGATAGTGAAGAGGAGGATACTGAAGCTGTGGTGAAGTCAACAACACCCCATATGTTCTGTAAGACTCTCACTGCATCTGATACCAGCACTCATGGGGGATTCTCTGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCTCTGGATTACAGTCAACAAAGACCATCGCAAGAGCTTGTGGCAAAGGATCTGCATGGTCTTGAATGGAGGTTTAGACATATATACCGGGGGCAGCCTCGGAGGCATTTGCTGACAACTGGATGGAGTGCATTTGTGAACAAGAAGAAGCTTGTGTCTGGAGATGCTGTGTTATTCCTTAGGGGTGAGGATGGGGAACTGAGACTAGGGATTCGGAGGGCAACTCAGTTGAAGAATGGTGGTGCCTTTGCAGCTCCCTCTTGTCAGCAACTGAGTCCTGGCACTCTTATGGATGTTATTAATGCTTTATCTTCAAGAAGTGCCTTTAGTGTGTGCTACAATCCAAGGATCAGCTCCTCAGAATTCATCATACCACGCCAGAAATTCTTGAAGAGCCTTGATTGTTCTTATTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGCGGAGATTTACTGGATTAATTGCTGGAATCGGTGATGTGGATCCTGTTAGATGGCCAGGGTCAAAATGGAGATGCTTACTGGTAAGGTGGGATGACATTGAAGCTGGTAGGCATAATAGAGTTTCCCCATGGGAAATTGAGCCATCTGGTCCTGCCACCTCTTCCAATAACTTGATGGCACCTGGTTTGAAGAGGACCAGGATCGGATTGACTTCGGCAAAGCTAGAGTTTCCAGTTCCCAATGGGATTGGGATGTCAGACTTTGGGGAATCATTGAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATAAGCCTTTTGATGGTATTAATGCTCAGAGCCCCAGGTTGTCTGAGTTAGGGAGGTGCTATCCTGGTTCAATCAGTTCTGGGACATCTGCTGTAGGAAATAATATTAGAATCCCTCAAGTGGGTTCTGATTTTTCCTGCAATGGCATAGGCTTTGGTGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGTAGAGCTTTGTCTATTGAAGAGCCTCGTGGGAATGGTCGCTTTGGACTTTTTGATGGATATCAGCTGCTGAGCCCCGGAAATGGATGGTCTTCCCAGATGCACGACAGTTCTTCACATTTGCATGCATCTGTTCCATCAGGGCAGGTGTCATCTCCTTCATCTGTGTTAATGTTCCAGCAAGCGGTTAATCCAGTTTTGAACACTGATTATAACAAACGCAACCACGAGATAGAGGGTAAAGTCCACTACCGAGGTTCACGCGCAACTGAAGCGAAACATGGAACATTTGCATCTCTCCCATCTCATGAGCCTATTTTCCCTGGAAGAGCAAAAGAAGGTAAAAACTCTCTTGGTATGTTTAACTGTCGCAATCAGTTGGGAAACTCGCGATCCCATGATTCAGTGTCACCACTGAGAGGCAGTAAAGAGTTGGCATCCTCATGCAAAAGCGGCTGCAGACTCTTTGGTTTTTCATTAACTGAGGACTCCCACATTGCTAATAAAGAGGCTGACCCCTCTGCAATCACCCGGCAATTGAATTCCAGTCCTTCGTTTACTAGACACGTCGAAGAAGAATTCCATCCAGGCCATTCTCTCAGGAGCAAAGCAGTTGGAAATAACTGCACAAAAGGTGTATTGCAGTGTTGA 2199 0.4679 MGLIDLNTTEEDEAPASGSTTGSASSPSHSGISTSASALAPPPPSSVCLELWHACAGPMISLPKKGSVVVYLPQGHFEQAQDFPLTSYNDISCHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQVGKTLRLGEIDADSEEEDTEAVVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRATQLKNGGAFAAPSCQQLSPGTLMDVINALSSRSAFSVCYNPRISSSEFIIPRQKFLKSLDCSYSVGMRFRMRFETEDAAERRFTGLIAGIGDVDPVRWPGSKWRCLLVRWDDIEAGRHNRVSPWEIEPSGPATSSNNLMAPGLKRTRIGLTSAKLEFPVPNGIGMSDFGESLRFRKVLQGQEILGVNKPFDGINAQSPRLSELGRCYPGSISSGTSAVGNNIRIPQVGSDFSCNGIGFGESFRFQKVLQGQEILPSQPYGRALSIEEPRGNGRFGLFDGYQLLSPGNGWSSQMHDSSSHLHASVPSGQVSSPSSVLMFQQAVNPVLNTDYNKRNHEIEGKVHYRGSRATEAKHGTFASLPSHEPIFPGRAKEGKNSLGMFNCRNQLGNSRSHDSVSPLRGSKELASSCKSGCRLFGFSLTEDSHIANKEADPSAITRQLNSSPSFTRHVEEEFHPGHSLRSKAVGNNCTKGVLQC* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0473 732 Pfam Auxin response factor 283 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod03g0473 732 MobiDBLite consensus disorder prediction 12 38 - -
Dod03g0473 732 SUPERFAMILY DNA-binding pseudobarrel domain 149 263 IPR015300 -
Dod03g0473 732 Gene3D - 154 258 IPR015300 -
Dod03g0473 732 ProSiteProfiles B3 DNA-binding domain profile. 156 258 IPR003340 GO:0003677
Dod03g0473 732 MobiDBLite consensus disorder prediction 1 38 - -
Dod03g0473 732 Gene3D - 319 392 - -
Dod03g0473 732 Pfam B3 DNA binding domain 156 257 IPR003340 GO:0003677
Dod03g0473 732 CDD B3_DNA 154 256 IPR003340 GO:0003677
Dod03g0473 732 SMART B3_2 156 258 IPR003340 GO:0003677
Dod03g0473 732 PANTHER AUXIN RESPONSE FACTOR 39 731 - -
Dod03g0473 732 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 39 731 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0473 Dod-Chr3 5722025 5728677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0473 45 510 B3 DNA Binding Superfamily AT5G60450 50.000 3.92e-145 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod03g0473 B3 2.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0473 K14486 - gmx:100789906 1145.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0473 03 5722025 5728677 Dod03g0473 03 5722025 5728677 ECH