Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0450 ATGGCGCCGAGGGATAATAAGACGGGTTGCGTTAAGGTTAACGGCAAGGGCAACGGCGTTGGCGTGAATAAGGAGGTGCATTTTAGAGGTGTGAGGAAGAGGCCGTGGGGGAGGTACGCCGCGGAGATAAGAGATCCCGGCAAGAAGAGCCGCGTCTGGCTCGGCACCTTCGACACGGCGGAGGAGGCGGCGCGTGCATACGACGCCGCTGCCCGCGAGTTCCGCGGCCCCAAGGCCAAGACAAACTTCCCCTTCCCTTCCGACAACGACAACATCAACATCAACGTCGTCGTCAAGAACAACAACCACCACCACAGCCCTAGCCAGAGCAGCACCGTCGAGTCCTCCAGTCGCGATCGCGACCACGCCGCCACCGATTCCTCGCCGCTCGACCTCAACTTGGCCCCCGCCGGAGCTGGATTCTCCGCCGTTAGCGGTGGCGCCAGCAGCGGCGGCGGCTCCATTCGGTTCCCGTTCCAACAGCAGATCGCGGTTTTTCCCGGCGCAATGGCTGCGGCGAACCAGATGTTGTACTTCGACGCTGTCCTACGCGCCGGCATGATGGGTGGTCCACTTCGGTTCGGTTTCGGTTATAACCGTCCGGCGGCGGGGGCAGCACAGAGCGACTCGGACTCTTCGTCGGTGGTCGATCTGAACCACCATGAAGGAGATCTTAAGGGTGGAAGAGACTTCGATCTCGACCTTAACCAACCTCCTCCACAAGAGATCGCTTGA 735 0.6122 MAPRDNKTGCVKVNGKGNGVGVNKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPFPSDNDNININVVVKNNNHHHSPSQSSTVESSSRDRDHAATDSSPLDLNLAPAGAGFSAVSGGASSGGGSIRFPFQQQIAVFPGAMAAANQMLYFDAVLRAGMMGGPLRFGFGYNRPAAGAAQSDSDSSSVVDLNHHEGDLKGGRDFDLDLNQPPPQEIA* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0450 244 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Dod03g0450 244 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Dod03g0450 244 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Dod03g0450 244 CDD AP2 27 84 IPR001471 GO:0003700|GO:0006355
Dod03g0450 244 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Dod03g0450 244 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Dod03g0450 244 MobiDBLite consensus disorder prediction 203 244 - -
Dod03g0450 244 MobiDBLite consensus disorder prediction 101 131 - -
Dod03g0450 244 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 225 - -
Dod03g0450 244 MobiDBLite consensus disorder prediction 215 231 - -
Dod03g0450 244 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Dod03g0450 244 MobiDBLite consensus disorder prediction 1 21 - -
Dod03g0450 244 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 225 - -
Dod03g0450 244 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0450 Dod-Chr3 5477469 5479287 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0450 1 93 AP2-EREBP Transcription Factor Family AT5G44210 68.367 1.00e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod03g0450 AP2 1.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0450 K09286 - gmx:100170742 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0450 03 5477469 5479287 Dod03g0450 03 5477469 5479287 ECH
Dod10g1233 10 32111322 32112607 Dod03g0450 03 5477469 5479287 ECH
Dod03g2097 03 49541454 49542869 Dod03g0450 03 5477469 5479287 ECH