Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0448 ATGGCTTCTTCTTCGGCTTCTCGCGAGGGACACTACAGAGGAGTAAGGAAGAGACCATGGGGGCGCTACGCTGCAGAGATACGCGATCCATGGAAGAAGACACGTGTCTGGTTGGGCACATTTGATACTCCAGAAGAGGCTGCGCTTGCCTACGACGGCGCCGCCCGTTCCCTCCGCGGAGCTAAGGCTAAGACCAACTTCCCTCCGGCGCCGGTCCCCGGTCTCTGCCTTGACCTCAACTCTCCTTCCTCCGATCACCACCGCTGGGCCACGTCCTCCTCCGTTCTCCCCTCCCGCGGCGGCCGCGGCGGCGGAGCTGGAGGCCTGGTCCTCGGCGAGTTCCTCCACACAGCCGTTCTCAAGGATATCAACCGCGTGGATCTGCCTCATGCACAGCCGCCACCTCCGCCTGCGGCGGCTCACCATAGACGCGGGGAGGTGACCGTTGCTGTTGCCGGAGTAGGTGGAGGCCAGGTGGCGGAGGGTTCTTCGACAGCGTCGTTTCTAGGGCTCGTTCGGCGCGGGATACCCATCGACTTGAACGAACCGCCGCCGTTGTGGCTATGA 567 0.6367 MASSSASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPVPGLCLDLNSPSSDHHRWATSSSVLPSRGGRGGGAGGLVLGEFLHTAVLKDINRVDLPHAQPPPPPAAAHHRRGEVTVAVAGVGGGQVAEGSSTASFLGLVRRGIPIDLNEPPPLWL* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0448 188 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Dod03g0448 188 SMART rav1_2 11 74 IPR001471 GO:0003700|GO:0006355
Dod03g0448 188 Gene3D AP2/ERF domain 11 69 IPR036955 GO:0003700|GO:0006355
Dod03g0448 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 6 177 - -
Dod03g0448 188 Pfam AP2 domain 11 60 IPR001471 GO:0003700|GO:0006355
Dod03g0448 188 PRINTS Ethylene responsive element binding protein signature 34 50 IPR001471 GO:0003700|GO:0006355
Dod03g0448 188 PRINTS Ethylene responsive element binding protein signature 12 23 IPR001471 GO:0003700|GO:0006355
Dod03g0448 188 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 177 - -
Dod03g0448 188 SUPERFAMILY DNA-binding domain 11 68 IPR016177 GO:0003677
Dod03g0448 188 ProSiteProfiles AP2/ERF domain profile. 11 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0448 Dod-Chr3 5447092 5448219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0448 1 188 AP2-EREBP Transcription Factor Family AT1G28360 46.860 1.13e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod03g0448 AP2 3.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0448 - - aip:107624305 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0448 03 5447092 5448219 Dod03g0448 03 5447092 5448219 ECH