Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dod03g0446 | ATGTCTCCGTCAGATTCCCCCGTTGCTGATGACGAAAACACCGATCGTTCCCTTGAAGCCTCTGATGATGCCAATGCCGAAGAAGAATTTGAAGAAGTAGAAGAAGAAGTAGAAGAGGAAGAGGAGGTAGAAGAGGTCGAAGAGGAAGAGGAGGAAGAAGTCGAAGAAGAGGAGGAGGAGGAGGAGGTGGAAGAAGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAAGAAGTCGAAGAAGAAGAGGAGGAAGAAGAAGAAGAAGTCGAAGAAGTCGAAGAAGTCGAAGAAGAAGTAGAGGAAGAGGAGGTGGAGGATGAAAAAGAGACGGTGACAGATTCTGCACCCGATGCCGATAAGGATCACAGAGATTCAAGCCAACATATGGAATCAGAGGGGCAAGAGGGGAACTTGAGGTCAGTTTTTTCTGTGGCAGAAAACCCTGCAGTAATGCCATCATCTAGTATGCAGTCCAAGGAAGAGGATCGGGACATGCTCAAAGCATCTGTTCCTTCACGTGAGATACTATCATTGAAACAGGAAAAGATTCAACCAAAACATGAAATTTCAAGTCATCCGGAATCAAGAAAAAATCTGACTGCTGCCACTGCTGCTAAAGATGGCAAAAGTCAAGTTTTAGATGTTGCTGTTGAAAATGCTGGAACCCTTGTACAGAGTAAAACGGATCAGGCCATGCTCAAAGCATCTGTTCCTTCATGTGAGATACTATCATCGAAAAAGGAAGAGATTCACCCAAAACATGAAATTTTGAGTCATCCAGAGTCAAGAAAAACCCTGACCTCTGCCACTTCTGCTGAAGATGGCAAAAGTCAAGTTTTAGATGTTGATGTTGAAAATGCTGGAACCCTTGTACAGAGTAAAACCTCTGGCGGATGCAGTGAACCAAGTTGCAATAGCAAAGCTTCTTTGGGTGGTGTTAAGGATATGGATTTTGGTGCCACCAAATCATCTATTGATACTGGAAAAGATGTGGCTACTGCCCTCGCACAGAGAGATTGCATCGTTGACCGCGCTGATGGCAGTCAGACTTCCTTGAAAAAAATCATGCCACTGGAGGTGGAGTCAAACAATGATGTGAAACAAATGACATCAAGGACGAGAAGTGTGTCTCCCAATGCTGAGATGAAAGGAGGAAACAAACGCCAAAAAATTATATGTGATTTTTATGCTAAAGGATGGTGCATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATTCTTCAAATAGTACTGGCCAGAAGGCTGAAGGAGACTTGGTTAATGCAAAGCAGAAGAGAGAATTGGAATCGGAAGAAGGTATTGAAGACAATGTCGAGAGTTCAAGGATGAATGAGCAAGAAATCCCAAGTTGGCATCCTTCTCAAGAAAAACATGAGTTCTGGTTGAGGGACAGCTTGTTTCCAGAGAGTAGATTTGCAGTTAACGCATCAAGCAATTATTTCAGCTCAAATATTTCTTCGTATTCAAACCGAGCAGAGGGAATGGCTACCATGCGAAGCCAGCATATGTACAATGGATATGCCTCTTCAGCTTTATTGAGTGACAAAGACTTTCATGCCCCGAGGTCCTCTTTCTCTGGCTCAGAACGTGAGGATTTGCCTCTAGTTGGTTCATCTAGGGTTCCAACACACTCCAGTGGATATATATCAAAAGTAAATTCATATGATTGGGAACCTTCTGTACCATTTCGACCATCTTTTTTAATTACTTCTATGAGTGTATCATCCCCGGAAGATTTGTATGACCCTCTTCGTGATAGCATTGAGATACCAAATATAGGAGATGGTTCTATGAAAGCTTCCCTTTTAATTCAAGGATCATCCATCCAGGGTTCATCACAGGTGCAGAAATATGGCAATTCTGCTGCAGTTGGGAAACGCATGTCTGATTTTAATGATGACAAAAGTTCTGTATCTTCTCGTAATAGATATTATGAAAATGAGCCAAACAAAGGTTTGGTTCCTCATGAAAAAGATTGTCTTGCGACTGAAATGGAAATAACATCGGGAACTTGTATAAACTATCCCAATGGTAAAATGGGCATGGGACAACATACATTTGGTGTCAAAGGTGTTACAAAAGCAGACAGAGAACAGACTGAGCATGATGCTAGACATCATAGTGAAGGTTCAGGGCACAAGAAGAGAGCAGATAGGGATAAGAAAATTAATGATATGGATGTTGACTCTCAGGCAGATGGCAGTTTGCAGAAAGAAACAAAAGCACTAAGAAATTTCCGTGCCGCTCTTGTTGATCTAGTGAAAGAGTTGTTAAAACCATTTTGGCATGAGGGTCGTCTCAGCAAGGATGCACATATTATGATAGTTAAAAAATCAGTTGACAAGGTCCTTAGCACCTTAGAGCCTCACCAGATTCCGACTACCGTAGATGCTGCTAAGCAATATGTTTCTTCATGTCGAGCGAAAATTGCAAAGCTGGTCAATGGATATGTCAATAAATATGGCAAGTCCTGA | 2544 | 0.4182 | MSPSDSPVADDENTDRSLEASDDANAEEEFEEVEEEVEEEEEVEEVEEEEEEEVEEEEEEEEVEEVEEEEEEEEEEEEEEEEEEEEEEEEEEVEEEEEEEEEEVEEVEEVEEEVEEEEVEDEKETVTDSAPDADKDHRDSSQHMESEGQEGNLRSVFSVAENPAVMPSSSMQSKEEDRDMLKASVPSREILSLKQEKIQPKHEISSHPESRKNLTAATAAKDGKSQVLDVAVENAGTLVQSKTDQAMLKASVPSCEILSSKKEEIHPKHEILSHPESRKTLTSATSAEDGKSQVLDVDVENAGTLVQSKTSGGCSEPSCNSKASLGGVKDMDFGATKSSIDTGKDVATALAQRDCIVDRADGSQTSLKKIMPLEVESNNDVKQMTSRTRSVSPNAEMKGGNKRQKIICDFYAKGWCIRGSSCSFLHIKDSSNSTGQKAEGDLVNAKQKRELESEEGIEDNVESSRMNEQEIPSWHPSQEKHEFWLRDSLFPESRFAVNASSNYFSSNISSYSNRAEGMATMRSQHMYNGYASSALLSDKDFHAPRSSFSGSEREDLPLVGSSRVPTHSSGYISKVNSYDWEPSVPFRPSFLITSMSVSSPEDLYDPLRDSIEIPNIGDGSMKASLLIQGSSIQGSSQVQKYGNSAAVGKRMSDFNDDKSSVSSRNRYYENEPNKGLVPHEKDCLATEMEITSGTCINYPNGKMGMGQHTFGVKGVTKADREQTEHDARHHSEGSGHKKRADRDKKINDMDVDSQADGSLQKETKALRNFRAALVDLVKELLKPFWHEGRLSKDAHIMIVKKSVDKVLSTLEPHQIPTTVDAAKQYVSSCRAKIAKLVNGYVNKYGKS* | 848 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dod03g0446 | 847 | MobiDBLite | consensus disorder prediction | 379 | 398 | - | - | |
Dod03g0446 | 847 | MobiDBLite | consensus disorder prediction | 9 | 23 | - | - | |
Dod03g0446 | 847 | MobiDBLite | consensus disorder prediction | 146 | 171 | - | - | |
Dod03g0446 | 847 | MobiDBLite | consensus disorder prediction | 269 | 292 | - | - | |
Dod03g0446 | 847 | PANTHER | PROTEIN FRIGIDA-ESSENTIAL 1 | 78 | 847 | - | - | |
Dod03g0446 | 847 | PANTHER | PROTEIN FRIGIDA-ESSENTIAL 1 | 78 | 847 | - | - | |
Dod03g0446 | 847 | MobiDBLite | consensus disorder prediction | 649 | 673 | - | - | |
Dod03g0446 | 847 | SMART | c3hfinal6 | 403 | 428 | IPR000571 | GO:0046872 | |
Dod03g0446 | 847 | MobiDBLite | consensus disorder prediction | 715 | 759 | - | - | |
Dod03g0446 | 847 | MobiDBLite | consensus disorder prediction | 379 | 397 | - | - | |
Dod03g0446 | 847 | MobiDBLite | consensus disorder prediction | 24 | 125 | - | - | |
Dod03g0446 | 847 | MobiDBLite | consensus disorder prediction | 430 | 474 | - | - | |
Dod03g0446 | 847 | MobiDBLite | consensus disorder prediction | 1 | 223 | - | - | |
Dod03g0446 | 847 | Coils | Coil | 23 | 127 | - | - | |
Dod03g0446 | 847 | MobiDBLite | consensus disorder prediction | 715 | 757 | - | - | |
Dod03g0446 | 847 | MobiDBLite | consensus disorder prediction | 194 | 209 | - | - | |
Dod03g0446 | 847 | MobiDBLite | consensus disorder prediction | 126 | 145 | - | - | |
Dod03g0446 | 847 | MobiDBLite | consensus disorder prediction | 442 | 465 | - | - | |
Dod03g0446 | 847 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 407 | 426 | IPR000571 | GO:0046872 | |
Dod03g0446 | 847 | ProSiteProfiles | Zinc finger C3H1-type profile. | 402 | 429 | IPR000571 | GO:0046872 | |
Dod03g0446 | 847 | SUPERFAMILY | CCCH zinc finger | 402 | 426 | IPR036855 | GO:0046872 | |
Dod03g0446 | 847 | Gene3D | - | 394 | 470 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dod03g0446 | Dod-Chr3 | 5425910 | 5430971 | Transposed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Dod03g0446 | zf-CCCH | 7.6e-06 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Dod03g0446 | - | - | adu:107468208 | 870.922 |