Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0446 ATGTCTCCGTCAGATTCCCCCGTTGCTGATGACGAAAACACCGATCGTTCCCTTGAAGCCTCTGATGATGCCAATGCCGAAGAAGAATTTGAAGAAGTAGAAGAAGAAGTAGAAGAGGAAGAGGAGGTAGAAGAGGTCGAAGAGGAAGAGGAGGAAGAAGTCGAAGAAGAGGAGGAGGAGGAGGAGGTGGAAGAAGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAAGAAGTCGAAGAAGAAGAGGAGGAAGAAGAAGAAGAAGTCGAAGAAGTCGAAGAAGTCGAAGAAGAAGTAGAGGAAGAGGAGGTGGAGGATGAAAAAGAGACGGTGACAGATTCTGCACCCGATGCCGATAAGGATCACAGAGATTCAAGCCAACATATGGAATCAGAGGGGCAAGAGGGGAACTTGAGGTCAGTTTTTTCTGTGGCAGAAAACCCTGCAGTAATGCCATCATCTAGTATGCAGTCCAAGGAAGAGGATCGGGACATGCTCAAAGCATCTGTTCCTTCACGTGAGATACTATCATTGAAACAGGAAAAGATTCAACCAAAACATGAAATTTCAAGTCATCCGGAATCAAGAAAAAATCTGACTGCTGCCACTGCTGCTAAAGATGGCAAAAGTCAAGTTTTAGATGTTGCTGTTGAAAATGCTGGAACCCTTGTACAGAGTAAAACGGATCAGGCCATGCTCAAAGCATCTGTTCCTTCATGTGAGATACTATCATCGAAAAAGGAAGAGATTCACCCAAAACATGAAATTTTGAGTCATCCAGAGTCAAGAAAAACCCTGACCTCTGCCACTTCTGCTGAAGATGGCAAAAGTCAAGTTTTAGATGTTGATGTTGAAAATGCTGGAACCCTTGTACAGAGTAAAACCTCTGGCGGATGCAGTGAACCAAGTTGCAATAGCAAAGCTTCTTTGGGTGGTGTTAAGGATATGGATTTTGGTGCCACCAAATCATCTATTGATACTGGAAAAGATGTGGCTACTGCCCTCGCACAGAGAGATTGCATCGTTGACCGCGCTGATGGCAGTCAGACTTCCTTGAAAAAAATCATGCCACTGGAGGTGGAGTCAAACAATGATGTGAAACAAATGACATCAAGGACGAGAAGTGTGTCTCCCAATGCTGAGATGAAAGGAGGAAACAAACGCCAAAAAATTATATGTGATTTTTATGCTAAAGGATGGTGCATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATTCTTCAAATAGTACTGGCCAGAAGGCTGAAGGAGACTTGGTTAATGCAAAGCAGAAGAGAGAATTGGAATCGGAAGAAGGTATTGAAGACAATGTCGAGAGTTCAAGGATGAATGAGCAAGAAATCCCAAGTTGGCATCCTTCTCAAGAAAAACATGAGTTCTGGTTGAGGGACAGCTTGTTTCCAGAGAGTAGATTTGCAGTTAACGCATCAAGCAATTATTTCAGCTCAAATATTTCTTCGTATTCAAACCGAGCAGAGGGAATGGCTACCATGCGAAGCCAGCATATGTACAATGGATATGCCTCTTCAGCTTTATTGAGTGACAAAGACTTTCATGCCCCGAGGTCCTCTTTCTCTGGCTCAGAACGTGAGGATTTGCCTCTAGTTGGTTCATCTAGGGTTCCAACACACTCCAGTGGATATATATCAAAAGTAAATTCATATGATTGGGAACCTTCTGTACCATTTCGACCATCTTTTTTAATTACTTCTATGAGTGTATCATCCCCGGAAGATTTGTATGACCCTCTTCGTGATAGCATTGAGATACCAAATATAGGAGATGGTTCTATGAAAGCTTCCCTTTTAATTCAAGGATCATCCATCCAGGGTTCATCACAGGTGCAGAAATATGGCAATTCTGCTGCAGTTGGGAAACGCATGTCTGATTTTAATGATGACAAAAGTTCTGTATCTTCTCGTAATAGATATTATGAAAATGAGCCAAACAAAGGTTTGGTTCCTCATGAAAAAGATTGTCTTGCGACTGAAATGGAAATAACATCGGGAACTTGTATAAACTATCCCAATGGTAAAATGGGCATGGGACAACATACATTTGGTGTCAAAGGTGTTACAAAAGCAGACAGAGAACAGACTGAGCATGATGCTAGACATCATAGTGAAGGTTCAGGGCACAAGAAGAGAGCAGATAGGGATAAGAAAATTAATGATATGGATGTTGACTCTCAGGCAGATGGCAGTTTGCAGAAAGAAACAAAAGCACTAAGAAATTTCCGTGCCGCTCTTGTTGATCTAGTGAAAGAGTTGTTAAAACCATTTTGGCATGAGGGTCGTCTCAGCAAGGATGCACATATTATGATAGTTAAAAAATCAGTTGACAAGGTCCTTAGCACCTTAGAGCCTCACCAGATTCCGACTACCGTAGATGCTGCTAAGCAATATGTTTCTTCATGTCGAGCGAAAATTGCAAAGCTGGTCAATGGATATGTCAATAAATATGGCAAGTCCTGA 2544 0.4182 MSPSDSPVADDENTDRSLEASDDANAEEEFEEVEEEVEEEEEVEEVEEEEEEEVEEEEEEEEVEEVEEEEEEEEEEEEEEEEEEEEEEEEEEVEEEEEEEEEEVEEVEEVEEEVEEEEVEDEKETVTDSAPDADKDHRDSSQHMESEGQEGNLRSVFSVAENPAVMPSSSMQSKEEDRDMLKASVPSREILSLKQEKIQPKHEISSHPESRKNLTAATAAKDGKSQVLDVAVENAGTLVQSKTDQAMLKASVPSCEILSSKKEEIHPKHEILSHPESRKTLTSATSAEDGKSQVLDVDVENAGTLVQSKTSGGCSEPSCNSKASLGGVKDMDFGATKSSIDTGKDVATALAQRDCIVDRADGSQTSLKKIMPLEVESNNDVKQMTSRTRSVSPNAEMKGGNKRQKIICDFYAKGWCIRGSSCSFLHIKDSSNSTGQKAEGDLVNAKQKRELESEEGIEDNVESSRMNEQEIPSWHPSQEKHEFWLRDSLFPESRFAVNASSNYFSSNISSYSNRAEGMATMRSQHMYNGYASSALLSDKDFHAPRSSFSGSEREDLPLVGSSRVPTHSSGYISKVNSYDWEPSVPFRPSFLITSMSVSSPEDLYDPLRDSIEIPNIGDGSMKASLLIQGSSIQGSSQVQKYGNSAAVGKRMSDFNDDKSSVSSRNRYYENEPNKGLVPHEKDCLATEMEITSGTCINYPNGKMGMGQHTFGVKGVTKADREQTEHDARHHSEGSGHKKRADRDKKINDMDVDSQADGSLQKETKALRNFRAALVDLVKELLKPFWHEGRLSKDAHIMIVKKSVDKVLSTLEPHQIPTTVDAAKQYVSSCRAKIAKLVNGYVNKYGKS* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0446 847 MobiDBLite consensus disorder prediction 379 398 - -
Dod03g0446 847 MobiDBLite consensus disorder prediction 9 23 - -
Dod03g0446 847 MobiDBLite consensus disorder prediction 146 171 - -
Dod03g0446 847 MobiDBLite consensus disorder prediction 269 292 - -
Dod03g0446 847 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 78 847 - -
Dod03g0446 847 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 78 847 - -
Dod03g0446 847 MobiDBLite consensus disorder prediction 649 673 - -
Dod03g0446 847 SMART c3hfinal6 403 428 IPR000571 GO:0046872
Dod03g0446 847 MobiDBLite consensus disorder prediction 715 759 - -
Dod03g0446 847 MobiDBLite consensus disorder prediction 379 397 - -
Dod03g0446 847 MobiDBLite consensus disorder prediction 24 125 - -
Dod03g0446 847 MobiDBLite consensus disorder prediction 430 474 - -
Dod03g0446 847 MobiDBLite consensus disorder prediction 1 223 - -
Dod03g0446 847 Coils Coil 23 127 - -
Dod03g0446 847 MobiDBLite consensus disorder prediction 715 757 - -
Dod03g0446 847 MobiDBLite consensus disorder prediction 194 209 - -
Dod03g0446 847 MobiDBLite consensus disorder prediction 126 145 - -
Dod03g0446 847 MobiDBLite consensus disorder prediction 442 465 - -
Dod03g0446 847 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 407 426 IPR000571 GO:0046872
Dod03g0446 847 ProSiteProfiles Zinc finger C3H1-type profile. 402 429 IPR000571 GO:0046872
Dod03g0446 847 SUPERFAMILY CCCH zinc finger 402 426 IPR036855 GO:0046872
Dod03g0446 847 Gene3D - 394 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0446 Dod-Chr3 5425910 5430971 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod03g0446 zf-CCCH 7.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0446 - - adu:107468208 870.922