Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0441 ATGGACGAGAACTGGGGTGAGGGAAAGAGGGCCTCGAAGTACAAGGTCGAGGAAGACGAGGAGGACGAAGATGAGGAGGAGGAAGAGGTGGGTTATGGGGATGATGATGAGAGAAAAAAGAGGGTGGTGACGGATCTGTACAGCAAGAGAGGGTCAAAAGCAGGGGGGTCAGTGCCACCTTCTTGCCAGGTGGACAGTTGCAATGCTGATCTGAGCAATGCTAAGCAGTACCACAAGCGGCACAAGGTCTGTGAGTACCATGCCAAGGCTCCGTCCGTACTCGTCTCAGAGCAACATCAAAGATTTTGCCAGCAATGTAGCAGGTTCCATCAGTTATCAGAATTTGATGACACAAAAAGGAGTTGTAGAAGGCGTTTAGCTGGACATAATGAGAGGCGTCGCAAAAATGCAGCTGACTATCATGGATAG 429 0.5012 MDENWGEGKRASKYKVEEDEEDEDEEEEEVGYGDDDERKKRVVTDLYSKRGSKAGGSVPPSCQVDSCNADLSNAKQYHKRHKVCEYHAKAPSVLVSEQHQRFCQQCSRFHQLSEFDDTKRSCRRRLAGHNERRRKNAADYHG* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0441 142 MobiDBLite consensus disorder prediction 1 40 - -
Dod03g0441 142 SUPERFAMILY SBT domain 60 140 IPR036893 GO:0003677|GO:0005634
Dod03g0441 142 PIRSF SBP 6 142 IPR017238 GO:0003677|GO:0003700|GO:0009908
Dod03g0441 142 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 16 136 - -
Dod03g0441 142 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 136 IPR044817 GO:0003677
Dod03g0441 142 MobiDBLite consensus disorder prediction 1 17 - -
Dod03g0441 142 Pfam SBP domain 62 135 IPR004333 GO:0003677
Dod03g0441 142 ProSiteProfiles Zinc finger SBP-type profile. 59 136 IPR004333 GO:0003677
Dod03g0441 142 MobiDBLite consensus disorder prediction 18 32 - -
Dod03g0441 142 Gene3D - 52 123 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0441 Dod-Chr3 5396016 5399342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0441 62 139 SBP-box Gene Family AT2G33810 78.205 1.09e-42 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod03g0441 SBP 7.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0441 - - gmx:100817597 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0441 03 5396016 5399342 Dod03g0441 03 5396016 5399342 ECH
Dod03g0441 03 5396016 5399342 Dod04g1451 04 36118694 36121062 ECH
Dod10g0972 10 27726838 27728179 Dod03g0441 03 5396016 5399342 ECH
Dod10g1239 10 32158946 32161200 Dod03g0441 03 5396016 5399342 ECH
Dod04g1451 04 36118694 36121062 Dod03g0441 03 5396016 5399342 PCT