Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0435 ATGAAGTTCAACATTGCAAATCCCACCACTGGATGCCAGAAGAAGCTTGAGATCGATGACGACCAGAAGCTCCGAGCATTTTGGGACAAAAGGATCTCTCAAGAGGTTGTTGGTGATGCCTTGGGTGAGGAATTTAAAGGCTATGTCTTCAAGATCACTGGTGGTTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTTCATAGAGGTAGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCAGTTTTGAACTTGGTAATTGTGAAGAAGGGTGAAAATGAGTTACCAGGCCTTACAGACCTTGAAAAGCCAAGGATGAGGGGTCCAAAGAGAGCATCCAAAATCCGCAAGCTGTTCAACCTGGCTAAGGAGGATGATGTGAGGAAGTATGTCAACACATACAGGCGAACATTTACAACCAAATCTGGGAAAAAGGTAAGCAAAGCTCCAAAGATACAACGGCTGGTTACTCCCCTGACACTTCAAAGAAAGCGGGCAAGGATTGCAGATAAAAAGAAGAGAATTGCCAAAGCAAAAGCAGACGCAGCAGAGTACCAGAAACTTCTTGCTTCCAGGTTGAAGGAGCAAAGGGAACGCCGTAGCGAGAGTTTGGCCAAGAGGAGATCAAAGCTTTCCAGTGCTGCTAAGCAAGTTACAACAGCATAG 753 0.4714 MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVVGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGRTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENELPGLTDLEKPRMRGPKRASKIRKLFNLAKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKADAAEYQKLLASRLKEQRERRSESLAKRRSKLSSAAKQVTTA* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0435 250 PIRSF RPS6e 1 250 IPR014401 GO:0003735|GO:0005840|GO:0006412
Dod03g0435 250 SMART Ribosomal_S6e_2 1 129 IPR001377 GO:0003735|GO:0005840|GO:0006412
Dod03g0435 250 PANTHER 40S RIBOSOMAL PROTEIN S6 1 248 - -
Dod03g0435 250 MobiDBLite consensus disorder prediction 221 238 - -
Dod03g0435 250 PANTHER 40S RIBOSOMAL PROTEIN S6 1 248 IPR001377 GO:0003735|GO:0005840|GO:0006412
Dod03g0435 250 MobiDBLite consensus disorder prediction 221 250 - -
Dod03g0435 250 Pfam Ribosomal protein S6e 1 129 IPR001377 GO:0003735|GO:0005840|GO:0006412
Dod03g0435 250 Gene3D - 134 235 - -
Dod03g0435 250 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Dod03g0435 250 Coils Coil 190 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0435 Dod-Chr3 5324875 5327276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g0435 1 250 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 71.200 3.76e-118 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0435 K02991 - gmx:100800507 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1455 04 36195558 36198134 Dod03g0435 03 5324875 5327276 PCT